Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG87_RS15930 Genome accession   NZ_CP127923
Coordinates   3264620..3265057 (-) Length   145 a.a.
NCBI ID   WP_087549870.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3259620..3270057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS15910 (QSG87_15915) - 3261573..3262286 (-) 714 WP_317023596.1 PilX N-terminal domain-containing pilus assembly protein -
  QSG87_RS15915 (QSG87_15920) - 3262286..3263308 (-) 1023 WP_394357283.1 PilW family protein -
  QSG87_RS15920 (QSG87_15925) pilV 3263298..3263828 (-) 531 WP_087549872.1 type IV pilus modification protein PilV -
  QSG87_RS15925 (QSG87_15930) - 3263838..3264305 (-) 468 WP_228199601.1 Tfp pilus assembly protein FimT/FimU -
  QSG87_RS15930 (QSG87_15935) comF 3264620..3265057 (-) 438 WP_087549870.1 type IV pilin protein Machinery gene
  QSG87_RS15935 (QSG87_15940) - 3265058..3265618 (-) 561 WP_087550014.1 type IV pilin protein -
  QSG87_RS15940 (QSG87_15945) - 3265629..3269741 (-) 4113 WP_317023598.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16106.35 Da        Isoelectric Point: 8.8763

>NTDB_id=845260 QSG87_RS15930 WP_087549870.1 3264620..3265057(-) (comF) [Acinetobacter chinensis strain SAAc573]
MHQKIKGFTLIEMMVVIAIIGILAAIAYPTYNNYKVRTNRTDLQNELSLIAQKLQAYHLVHNSYKNADLSVAGYTAPAKY
PKQDMAHYSLALTVDSDFKGWKLEATPVSSIQNGDGKVCLNDQGYKSWQKGQVSCSLSSTSGWDN

Nucleotide


Download         Length: 438 bp        

>NTDB_id=845260 QSG87_RS15930 WP_087549870.1 3264620..3265057(-) (comF) [Acinetobacter chinensis strain SAAc573]
ATGCATCAGAAAATCAAAGGATTTACCTTAATTGAAATGATGGTGGTGATTGCAATTATTGGTATTCTTGCCGCGATTGC
ATATCCGACATACAACAACTACAAAGTCCGAACCAACCGAACGGATTTACAGAATGAATTAAGCCTGATTGCACAGAAAT
TACAGGCTTATCACCTTGTTCATAACAGTTATAAAAATGCAGATCTTTCAGTGGCAGGTTATACCGCACCGGCAAAATAT
CCGAAGCAGGATATGGCGCATTATTCATTGGCGCTGACAGTGGATTCAGATTTTAAAGGGTGGAAACTGGAGGCAACACC
GGTATCGTCTATTCAGAATGGAGATGGAAAAGTCTGCCTGAATGATCAGGGCTATAAATCCTGGCAAAAAGGGCAGGTCA
GCTGTTCACTCAGCAGTACATCTGGATGGGATAACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

56.115

95.862

0.538
  pilE Acinetobacter baumannii D1279779

45.652

95.172

0.434