Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   QSG87_RS09810 Genome accession   NZ_CP127923
Coordinates   2002098..2002724 (-) Length   208 a.a.
NCBI ID   WP_317022913.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997098..2007724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS09780 (QSG87_09780) - 1997488..1997919 (-) 432 WP_087551012.1 SRPBCC family protein -
  QSG87_RS09785 (QSG87_09785) tadA 1998002..1998523 (-) 522 WP_317022908.1 tRNA adenosine(34) deaminase TadA -
  QSG87_RS09790 (QSG87_09790) - 1998531..1999655 (-) 1125 WP_317022909.1 enoyl-CoA hydratase/isomerase family protein -
  QSG87_RS09795 (QSG87_09795) ung 1999652..2000365 (-) 714 WP_317022910.1 uracil-DNA glycosylase -
  QSG87_RS09800 (QSG87_09800) - 2000403..2001002 (-) 600 WP_317022911.1 6-carboxytetrahydropterin synthase -
  QSG87_RS09805 (QSG87_09805) gspK 2001105..2002097 (-) 993 WP_317022912.1 type II secretion system minor pseudopilin GspK -
  QSG87_RS09810 (QSG87_09810) xcpW 2002098..2002724 (-) 627 WP_317022913.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QSG87_RS09815 (QSG87_09815) xcpV 2002721..2003104 (-) 384 WP_087512292.1 type II secretion system minor pseudopilin GspI Machinery gene
  QSG87_RS09820 (QSG87_09820) - 2003091..2003651 (-) 561 WP_317022914.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSG87_RS09825 (QSG87_09825) - 2003660..2004274 (-) 615 WP_087551004.1 TetR/AcrR family transcriptional regulator -
  QSG87_RS09830 (QSG87_09830) - 2004324..2005097 (-) 774 WP_317022915.1 TatD family hydrolase -
  QSG87_RS09835 (QSG87_09835) - 2005123..2005464 (-) 342 WP_087512296.1 PilZ domain-containing protein -
  QSG87_RS09840 (QSG87_09840) - 2005476..2006459 (-) 984 WP_317022916.1 DNA polymerase III subunit delta' -
  QSG87_RS09845 (QSG87_09845) kdsB 2006475..2007236 (-) 762 WP_087512298.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23341.73 Da        Isoelectric Point: 5.0727

>NTDB_id=845243 QSG87_RS09810 WP_317022913.1 2002098..2002724(-) (xcpW) [Acinetobacter chinensis strain SAAc573]
MSRSKGFTLVELLVAIAIFAVLSALGWKVFDYLSKVSERNEMHEANLSALQEAHQQILRDSLQIAPLTANIKGETAPALI
LQNGVLIFSKTGVTDPLAQGTPPDERVEYRYRADEKKLYRLKYSYLNQTGQEQPVSSVLLENVEQYDVSVLNPAELKSWP
EATADVENVQQKALLPRGIMLSLTVQGISYQWLYSLLNTDFLKQEAVK

Nucleotide


Download         Length: 627 bp        

>NTDB_id=845243 QSG87_RS09810 WP_317022913.1 2002098..2002724(-) (xcpW) [Acinetobacter chinensis strain SAAc573]
ATGAGCAGGTCAAAAGGATTTACCCTTGTTGAGCTGCTGGTTGCAATTGCTATTTTCGCAGTGCTCTCTGCACTCGGCTG
GAAAGTGTTTGATTATCTCTCGAAGGTCAGTGAGCGTAATGAAATGCATGAGGCGAATTTATCCGCCTTACAGGAAGCTC
ATCAGCAGATTCTTAGAGACAGTCTTCAGATTGCACCATTAACTGCAAATATCAAAGGTGAAACAGCCCCCGCGCTGATT
CTGCAGAATGGTGTGCTGATTTTCAGTAAAACAGGTGTTACAGACCCTCTGGCTCAGGGCACACCACCCGATGAGCGGGT
GGAATACCGTTATCGTGCAGATGAAAAAAAACTCTATAGATTAAAATACAGTTACCTGAATCAGACAGGGCAGGAACAGC
CTGTTTCGAGTGTGCTGCTTGAAAACGTTGAACAGTATGATGTTTCTGTCCTGAATCCGGCAGAGCTGAAGAGCTGGCCT
GAGGCGACGGCAGATGTAGAAAATGTTCAGCAGAAAGCATTGTTGCCCAGAGGGATTATGCTGAGTCTGACCGTACAGGG
GATATCCTATCAGTGGTTGTATAGCCTGTTGAATACAGACTTTCTGAAACAGGAAGCCGTAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.454

99.519

0.582