Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG83_RS02370 Genome accession   NZ_CP127892
Coordinates   280266..280691 (+) Length   141 a.a.
NCBI ID   WP_004644984.1    Uniprot ID   N8Q795
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275266..285691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02360 (QSG83_02360) - 275856..279563 (+) 3708 WP_317028244.1 pilus assembly protein PilC -
  QSG83_RS02365 (QSG83_02365) - 279574..280266 (+) 693 WP_096901261.1 type IV pilin protein -
  QSG83_RS02370 (QSG83_02370) comF 280266..280691 (+) 426 WP_004644984.1 type IV pilin protein Machinery gene
  QSG83_RS02375 (QSG83_02375) rpsP 280893..281150 (+) 258 WP_004974526.1 30S ribosomal protein S16 -
  QSG83_RS02380 (QSG83_02380) rimM 281178..281726 (+) 549 WP_178866806.1 ribosome maturation factor RimM -
  QSG83_RS02385 (QSG83_02385) trmD 281767..282507 (+) 741 WP_317028245.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QSG83_RS02390 (QSG83_02390) rplS 282689..283060 (+) 372 WP_004974529.1 50S ribosomal protein L19 -
  QSG83_RS02395 (QSG83_02395) - 283127..284095 (-) 969 WP_317028246.1 triacylglycerol lipase -
  QSG83_RS02400 (QSG83_02400) - 284296..285213 (-) 918 WP_225531238.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15578.72 Da        Isoelectric Point: 8.9007

>NTDB_id=845082 QSG83_RS02370 WP_004644984.1 280266..280691(+) (comF) [Acinetobacter towneri strain SAAt401]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQSEMMQIAQRLQSYYVINHNYTNARLDNGTVSKAYPA
SGSVYTITLAPLDQTWTLTAVPTPNTVQDGNGAVVLNSQGQKCWEKGTTCSVSTSSNWESR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=845082 QSG83_RS02370 WP_004644984.1 280266..280691(+) (comF) [Acinetobacter towneri strain SAAt401]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTGCAAAGTGAAATGATGCAAATAGCCCAGCGGT
TACAGAGTTATTATGTCATCAATCATAATTATACCAACGCAAGATTGGACAATGGCACAGTGAGTAAAGCCTATCCTGCT
TCAGGAAGTGTATATACCATCACCCTTGCGCCACTCGATCAAACTTGGACGCTTACGGCAGTCCCAACCCCGAATACAGT
TCAAGATGGTAATGGAGCAGTGGTGCTAAATAGCCAAGGGCAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTA
CATCTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q795

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

55.396

98.582

0.546
  pilE Acinetobacter baumannii D1279779

52.941

96.454

0.511