Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QRD24_RS23225 Genome accession   NZ_CP127874
Coordinates   4433560..4435917 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia megaterium strain ELP1.24a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4428560..4440917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD24_RS23205 (QRD24_23200) alaS 4428869..4431502 (-) 2634 WP_217598400.1 alanine--tRNA ligase -
  QRD24_RS23210 (QRD24_23205) - 4431891..4432952 (-) 1062 WP_013059290.1 AI-2E family transporter -
  QRD24_RS23215 (QRD24_23210) - 4433067..4433201 (-) 135 WP_013059291.1 YrzQ family protein -
  QRD24_RS23220 (QRD24_23215) - 4433227..4433418 (-) 192 WP_013059292.1 hypothetical protein -
  QRD24_RS23225 (QRD24_23220) recD2 4433560..4435917 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QRD24_RS23230 (QRD24_23225) - 4435942..4436601 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  QRD24_RS23235 (QRD24_23230) mnmA 4436759..4437871 (-) 1113 WP_028410593.1 tRNA 2-thiouridine(34) synthase MnmA -
  QRD24_RS23240 (QRD24_23235) - 4437978..4439120 (-) 1143 WP_286127761.1 cysteine desulfurase family protein -
  QRD24_RS23245 (QRD24_23240) - 4439144..4439560 (-) 417 WP_013059297.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=845036 QRD24_RS23225 WP_013059293.1 4433560..4435917(-) (recD2) [Priestia megaterium strain ELP1.24a]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=845036 QRD24_RS23225 WP_013059293.1 4433560..4435917(-) (recD2) [Priestia megaterium strain ELP1.24a]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGCATCGGTAAAAAAACCGCTGAAAACATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTATAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGCGCAGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGGCATGTATACGTTACGGCAGACCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGATAAAAAGCTTATCATCCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCGGAATCAGAATTTTTATTGGCTCTGGGTGAACTAGAAGAGCGGTTAGACGTCCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTCTTAACAGGTGGACCAGGTACAGGAAAAACAACGG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAGGCT
TTTCCTGTTTTACTTGTGGCACCTACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACCGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAAAATCCAATTGACGGAAAATTACTGATTG
TAGATGAAGTATCAATGGTAGATTTGTGGCTCGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTATTAAAAGATTTACTGAGTTCCGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATTACGAACGTTGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAACTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTTTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGAGAAGACGAAGCGTTTCAGCTTGGAGTTAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCGCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637