Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   L6410_RS06220 Genome accession   NZ_AP024276
Coordinates   1234065..1234904 (-) Length   279 a.a.
NCBI ID   WP_237395115.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1229065..1239904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS06200 (SUT286_11920) - 1229225..1229398 (-) 174 Protein_1192 DUF2087 domain-containing protein -
  L6410_RS06205 (SUT286_11930) pheT 1229598..1231997 (-) 2400 WP_237395114.1 phenylalanine--tRNA ligase subunit beta -
  L6410_RS06210 (SUT286_11940) - 1231999..1232520 (-) 522 WP_105127377.1 GNAT family N-acetyltransferase -
  L6410_RS06215 (SUT286_11950) pheS 1232720..1233763 (-) 1044 WP_024392320.1 phenylalanine--tRNA ligase subunit alpha -
  L6410_RS06220 (SUT286_11960) endA 1234065..1234904 (-) 840 WP_237395115.1 DNA/RNA non-specific endonuclease Machinery gene
  L6410_RS06225 (SUT286_11970) - 1234934..1235125 (-) 192 WP_172041070.1 DNA-directed RNA polymerase subunit beta -
  L6410_RS06230 (SUT286_11980) murA 1235118..1236401 (-) 1284 WP_237395116.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  L6410_RS06235 (SUT286_11990) - 1236424..1236651 (-) 228 WP_237395117.1 DUF1146 family protein -
  L6410_RS06240 (SUT286_12000) - 1236835..1237941 (-) 1107 WP_237395118.1 ABC transporter ATP-binding protein -
  L6410_RS06245 (SUT286_12010) - 1237942..1238679 (-) 738 WP_172019170.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30183.37 Da        Isoelectric Point: 6.0261

>NTDB_id=84482 L6410_RS06220 WP_237395115.1 1234065..1234904(-) (endA) [Streptococcus parasuis strain SUT-286]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYRSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=84482 L6410_RS06220 WP_237395115.1 1234065..1234904(-) (endA) [Streptococcus parasuis strain SUT-286]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAATGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAGAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAGACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACAGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGCGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTACTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCCAACGATCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACTTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTTCAGAGCGGTCTCAG
TATCAACTATCGTAGTGGGGAAATTACGGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599

Multiple sequence alignment