Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QR692_RS10415 Genome accession   NZ_CP127854
Coordinates   2099883..2100818 (-) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus petauri strain GB97     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094883..2105818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR692_RS10390 (QR692_10390) - 2094953..2095936 (-) 984 WP_252170030.1 hypothetical protein -
  QR692_RS10395 (QR692_10395) - 2095926..2096777 (-) 852 WP_252170031.1 hypothetical protein -
  QR692_RS10400 (QR692_10400) - 2096758..2097132 (-) 375 WP_252170032.1 hypothetical protein -
  QR692_RS10405 (QR692_10405) - 2097293..2098486 (-) 1194 WP_019292239.1 acetate kinase -
  QR692_RS10410 (QR692_10410) - 2098605..2099798 (-) 1194 WP_019292240.1 acetate kinase -
  QR692_RS10415 (QR692_10415) comYH 2099883..2100818 (-) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  QR692_RS10420 (QR692_10420) - 2100864..2101094 (-) 231 WP_019292242.1 DUF3165 family protein -
  QR692_RS10425 (QR692_10425) typA 2101173..2103014 (-) 1842 WP_019335381.1 translational GTPase TypA -
  QR692_RS10430 (QR692_10430) - 2103335..2103547 (+) 213 WP_003133311.1 YqgQ family protein -
  QR692_RS10435 (QR692_10435) - 2103540..2104505 (+) 966 WP_019292244.1 ROK family glucokinase -
  QR692_RS10440 (QR692_10440) - 2104525..2104905 (+) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  QR692_RS10445 (QR692_10445) - 2104945..2105391 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=844774 QR692_RS10415 WP_019292241.1 2099883..2100818(-) (comYH) [Lactococcus petauri strain GB97]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=844774 QR692_RS10415 WP_019292241.1 2099883..2100818(-) (comYH) [Lactococcus petauri strain GB97]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACTGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492