Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VZG88_RS08640 Genome accession   NZ_CP143871
Coordinates   1734576..1735655 (+) Length   359 a.a.
NCBI ID   WP_338437778.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1729576..1740655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS08615 (VZG88_08615) glyQ 1730175..1731053 (-) 879 WP_208678612.1 glycine--tRNA ligase subunit alpha -
  VZG88_RS08620 (VZG88_08620) - 1731156..1732106 (-) 951 WP_208678611.1 DUF4335 domain-containing protein -
  VZG88_RS08625 (VZG88_08625) - 1732113..1732799 (-) 687 WP_228383202.1 DUF3038 domain-containing protein -
  VZG88_RS08630 (VZG88_08630) - 1732907..1733422 (+) 516 WP_208678610.1 adenine phosphoribosyltransferase -
  VZG88_RS08635 (VZG88_08635) - 1733426..1734421 (+) 996 WP_208675658.1 ABC transporter permease -
  VZG88_RS08640 (VZG88_08640) pilM 1734576..1735655 (+) 1080 WP_338437778.1 type IV pilus assembly protein PilM Machinery gene
  VZG88_RS08645 (VZG88_08645) - 1735658..1736380 (+) 723 WP_208678609.1 PilN domain-containing protein -
  VZG88_RS08650 (VZG88_08650) - 1736377..1737189 (+) 813 WP_208675656.1 pilus assembly protein PilO -
  VZG88_RS08655 (VZG88_08655) - 1737253..1739589 (+) 2337 WP_208678608.1 secretin N-terminal domain-containing protein -
  VZG88_RS08660 (VZG88_08660) - 1739687..1740400 (-) 714 WP_208678607.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39428.27 Da        Isoelectric Point: 4.3677

>NTDB_id=844593 VZG88_RS08640 WP_338437778.1 1734576..1735655(+) (pilM) [Synechococcus elongatus IITB6]
MVGIFSKFLGGDKSRLGVEITPERINLAHIGRKGNRLLLQDFVSVDLPDGLFQDGRVIDSFSLSDLLRTAISDNRIKTKK
VSTAVPGREVITRLLPMPAELDDAELHETLLNQEAALFLPFPREEADIDYLKLDYFLDIDEVEKLHVLLVATRRQVTDTY
LDLFAQAGLTPDIVEVGSFALIRTIRESLRQYGLQEAVILLNIEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGL
ENIGRGLDFLQGQALSLLEPPADLLSQGLVRSAADLCDEVRRSADFYLSQESDIEVAKLYVAGPGSALPTLPEFLGQRLG
LPVELVDPVEGLGLEVPDTLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=844593 VZG88_RS08640 WP_338437778.1 1734576..1735655(+) (pilM) [Synechococcus elongatus IITB6]
GTGGTCGGCATATTTTCTAAGTTTCTTGGTGGGGATAAATCTCGCCTTGGGGTGGAGATTACCCCAGAGCGGATCAACCT
TGCCCATATCGGCCGCAAGGGGAACCGGTTGCTGCTGCAGGATTTTGTTTCGGTCGACTTGCCCGATGGTTTGTTCCAAG
ACGGGCGCGTCATTGACAGCTTCAGTTTGTCCGATTTACTCCGCACTGCTATCAGTGACAACCGCATTAAAACCAAAAAG
GTTTCTACGGCAGTCCCCGGGCGTGAGGTGATCACGCGGCTGCTGCCGATGCCAGCTGAGCTGGATGATGCGGAGTTGCA
CGAGACATTGCTCAATCAAGAAGCAGCGCTGTTTCTGCCCTTCCCCCGTGAAGAAGCTGATATTGACTACCTCAAACTGG
ATTACTTCCTCGATATTGATGAGGTCGAAAAGCTGCATGTCTTGCTGGTGGCGACCCGGCGACAAGTTACCGACACCTAT
CTCGATCTCTTTGCCCAAGCGGGTCTAACGCCCGACATCGTGGAAGTTGGGAGCTTCGCACTCATCCGCACCATTCGCGA
ATCCCTGCGGCAGTACGGTCTTCAAGAAGCCGTCATCCTCCTTAATATCGAATATGACCTCACCGAGATTGTGATCATCG
TTGGCGGGGTGCCTCGCTTCAGCCGCACAATCGCCATGGGAACCCAGCAATGGCAACGTGCGGCCGCCCAAGCAGGTCTT
GAAAATATCGGCCGCGGCCTTGATTTTTTACAGGGACAAGCACTCTCGCTACTCGAGCCGCCAGCCGATCTCCTCTCGCA
AGGTCTAGTGCGATCGGCGGCTGATCTCTGCGACGAAGTGCGGCGATCGGCAGACTTCTATCTCAGTCAAGAAAGTGATA
TTGAAGTCGCCAAGCTCTACGTAGCCGGCCCCGGTTCTGCCTTGCCAACTTTGCCTGAGTTCTTAGGGCAACGCCTGGGT
CTGCCGGTGGAGCTCGTTGATCCGGTGGAAGGACTGGGGCTGGAAGTGCCCGACACGCTCTACTTGCCCAACCGTGCTGA
CGTGGGTGTGGTACTTGGTTTGGCCACGCGAGGAGTGTAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.049

100

0.471