Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VZG88_RS01995 Genome accession   NZ_CP143871
Coordinates   382628..383416 (-) Length   262 a.a.
NCBI ID   WP_208677575.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377628..388416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS01975 (VZG88_01975) fni 377736..378782 (+) 1047 WP_208677571.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  VZG88_RS01980 (VZG88_01980) dacB 378680..380137 (+) 1458 WP_208677572.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  VZG88_RS01985 (VZG88_01985) - 380143..380643 (-) 501 WP_208677573.1 hypothetical protein -
  VZG88_RS01990 (VZG88_01990) - 380790..382520 (-) 1731 WP_338438517.1 hypothetical protein -
  VZG88_RS01995 (VZG88_01995) pilD 382628..383416 (-) 789 WP_208677575.1 A24 family peptidase Machinery gene
  VZG88_RS02000 (VZG88_02000) - 383422..383664 (-) 243 WP_208673049.1 hypothetical protein -
  VZG88_RS02005 (VZG88_02005) - 383887..386601 (-) 2715 WP_338438520.1 DEAD/DEAH box helicase -
  VZG88_RS02010 (VZG88_02010) - 386752..387771 (-) 1020 WP_208673045.1 hypothetical protein -
  VZG88_RS02015 (VZG88_02015) - 387951..388178 (+) 228 WP_011242545.1 photosystem I reaction center subunit IV -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28551.26 Da        Isoelectric Point: 9.9155

>NTDB_id=844563 VZG88_RS01995 WP_208677575.1 382628..383416(-) (pilD) [Synechococcus elongatus IITB6]
MFEAVALLFIAVLGAAIGSFLNVVIYRLPLGLSLLHPPSRCPYCRRSLRPQDNVPIIGWLKLKGRCHFCQHRIPARYPIV
EAFTAALFVLLAVQFGWSVATVGGWILFSWLLALSVIDLDTMTLPNALTASGLAVGVAFQLAIAPANWPVTLFWSLFVAI
AALWLSDLFRWVGEFVLRQPVLGGGDSKLLALLGVWLGGPKLLLALFLACLSGAIAGGIGRWRGTLKPMQAMPFGPFLAL
GGAIAWIWGAEWIQLYQQVLLF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=844563 VZG88_RS01995 WP_208677575.1 382628..383416(-) (pilD) [Synechococcus elongatus IITB6]
ATGTTTGAAGCCGTTGCGCTGTTGTTTATCGCGGTTTTAGGCGCTGCAATCGGCAGTTTTCTCAATGTGGTGATCTATCG
GCTGCCATTGGGACTATCGCTGCTGCACCCGCCCTCCCGTTGTCCTTACTGCCGGCGATCGCTGCGTCCTCAAGATAATG
TGCCGATTATTGGCTGGCTAAAGCTGAAGGGTCGCTGTCATTTTTGTCAGCATCGGATTCCCGCTCGCTACCCAATTGTT
GAGGCATTTACTGCAGCTCTATTTGTTTTGCTAGCAGTGCAGTTTGGTTGGTCGGTAGCCACGGTCGGTGGCTGGATTCT
CTTCTCGTGGCTCTTAGCCTTGAGTGTCATTGACCTCGATACGATGACGCTGCCCAATGCACTGACGGCTTCGGGACTAG
CTGTGGGCGTCGCTTTTCAGTTGGCGATCGCGCCAGCAAATTGGCCTGTGACGTTGTTCTGGTCGTTGTTTGTGGCGATC
GCGGCATTGTGGCTCAGTGATCTATTTCGCTGGGTTGGTGAATTTGTGCTTCGACAGCCGGTACTCGGCGGTGGCGACAG
CAAGTTGCTAGCACTTTTGGGTGTTTGGCTAGGCGGTCCTAAACTGCTTTTAGCACTGTTCCTCGCTTGTCTGAGTGGCG
CGATCGCGGGGGGTATTGGACGCTGGCGTGGCACACTCAAGCCAATGCAGGCGATGCCTTTTGGTCCGTTCCTAGCACTA
GGCGGCGCGATCGCCTGGATCTGGGGAGCCGAGTGGATTCAACTGTATCAACAGGTTTTACTTTTTTAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-95)

Type IV leader peptidase family (Peptidase_A24)

(106-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

36.496

100

0.382
  pilD Vibrio cholerae strain A1552

35.231

100

0.378