Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VZH39_RS08470 Genome accession   NZ_CP143862
Coordinates   1726553..1727632 (+) Length   359 a.a.
NCBI ID   WP_338429492.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1721553..1732632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS08445 (VZH39_08445) glyQ 1722152..1723030 (-) 879 WP_208675661.1 glycine--tRNA ligase subunit alpha -
  VZH39_RS08450 (VZH39_08450) - 1723133..1724083 (-) 951 WP_338429490.1 DUF4335 domain-containing protein -
  VZH39_RS08455 (VZH39_08455) - 1724090..1724776 (-) 687 WP_228383202.1 DUF3038 domain-containing protein -
  VZH39_RS08460 (VZH39_08460) - 1724884..1725399 (+) 516 WP_338429491.1 adenine phosphoribosyltransferase -
  VZH39_RS08465 (VZH39_08465) - 1725403..1726398 (+) 996 WP_208675658.1 ABC transporter permease -
  VZH39_RS08470 (VZH39_08470) pilM 1726553..1727632 (+) 1080 WP_338429492.1 type IV pilus assembly protein PilM Machinery gene
  VZH39_RS08475 (VZH39_08475) - 1727635..1728357 (+) 723 WP_338429493.1 PilN domain-containing protein -
  VZH39_RS08480 (VZH39_08480) - 1728354..1729157 (+) 804 WP_338429494.1 pilus assembly protein PilO -
  VZH39_RS08485 (VZH39_08485) - 1729221..1731503 (+) 2283 WP_338429495.1 secretin N-terminal domain-containing protein -
  VZH39_RS08490 (VZH39_08490) - 1731596..1732309 (-) 714 WP_338429496.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39443.28 Da        Isoelectric Point: 4.3977

>NTDB_id=844543 VZH39_RS08470 WP_338429492.1 1726553..1727632(+) (pilM) [Synechococcus elongatus IITB8]
MVGIFSKFLGGDKSRLGVEITPERINLAHIGRKGNRLLLQDFVSVDLPDGLFQDGRVIDSFSLSDLLRTAISDNRIKTKK
VSTAVPGREVITRLLPMPAELDDAELHETLLNQEAALFLPFPREEADIDYLKLDYFLDIDEVEKLHVLLVATRRQVTDTY
LDLFAQAGLTPDIVEVGSFALIRTIRESLRQYGLQEAVILLNIEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGL
ENIGRGLDFLQGQSLSLLEPPADLLSQGLVRSAADLCDEVRRSADFYLSQESDIEVAKLYVAGPGSALPTLPEFLGQRLG
LPVELVDPVEGLGLEVPNTLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=844543 VZH39_RS08470 WP_338429492.1 1726553..1727632(+) (pilM) [Synechococcus elongatus IITB8]
GTGGTCGGCATATTTTCTAAGTTTCTTGGTGGGGATAAATCTCGCCTTGGGGTGGAGATCACCCCAGAGCGGATCAACCT
TGCCCATATCGGCCGCAAGGGGAACCGGTTGCTGCTGCAGGATTTTGTTTCGGTCGACTTGCCCGATGGTTTGTTCCAAG
ACGGGCGAGTCATTGACAGCTTTAGCTTGTCCGATTTACTCCGCACTGCTATCAGTGACAACCGCATTAAAACCAAAAAG
GTTTCTACGGCAGTCCCCGGGCGTGAGGTGATCACGCGGCTGCTGCCGATGCCAGCTGAGCTGGATGATGCGGAGTTGCA
CGAGACATTGCTCAATCAAGAAGCAGCGCTGTTTCTGCCCTTCCCCCGTGAAGAAGCTGATATCGATTACCTCAAACTGG
ATTACTTCCTTGATATTGATGAGGTCGAAAAGCTGCATGTCTTGCTGGTAGCGACCCGGCGACAAGTTACCGACACCTAT
CTCGATCTCTTTGCCCAAGCGGGTCTAACGCCCGACATCGTGGAAGTTGGGAGCTTCGCACTTATCCGCACCATTCGCGA
ATCCCTGCGGCAGTACGGTCTTCAAGAAGCCGTCATCCTCCTTAATATCGAATATGACCTCACCGAGATTGTGATCATCG
TTGGGGGGGTGCCTCGCTTCAGCCGTACGATTGCCATGGGAACCCAGCAATGGCAACGCGCGGCCGCCCAAGCAGGTCTT
GAAAATATCGGCCGCGGCCTTGATTTTCTACAGGGACAATCACTCTCACTGCTCGAGCCGCCAGCCGATCTCCTATCGCA
AGGTCTAGTGCGATCAGCGGCTGATCTCTGCGACGAAGTGCGGCGATCGGCAGACTTCTATCTCAGCCAAGAAAGTGATA
TTGAAGTCGCCAAGCTCTACGTAGCCGGTCCTGGTTCTGCCTTGCCGACCTTGCCTGAGTTCTTAGGGCAACGATTGGGT
CTGCCGGTGGAGCTCGTTGATCCGGTGGAAGGACTAGGGCTGGAAGTGCCCAACACGCTCTACTTGCCCAACCGTGCTGA
TGTGGGTGTAGTACTCGGTTTGGCCACGCGAGGAGTGTAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.049

100

0.471