Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSY31_RS08150 Genome accession   NZ_CP127834
Coordinates   1611925..1612704 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Ag109     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606925..1617704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS08130 (NSY31_08130) trmFO 1607612..1608919 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSY31_RS08135 (NSY31_08135) xerC 1608989..1609906 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NSY31_RS08140 (NSY31_08140) hslV 1609922..1610467 (+) 546 WP_063095268.1 ATP-dependent protease subunit HslV -
  NSY31_RS08145 (NSY31_08145) hslU 1610475..1611887 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  NSY31_RS08150 (NSY31_08150) codY 1611925..1612704 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSY31_RS08155 (NSY31_08155) flgB 1613058..1613447 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NSY31_RS08160 (NSY31_08160) flgC 1613447..1613899 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NSY31_RS08165 (NSY31_08165) fliE 1613910..1614230 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NSY31_RS08170 (NSY31_08170) fliF 1614273..1615883 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  NSY31_RS08175 (NSY31_08175) fliG 1615896..1616912 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NSY31_RS08180 (NSY31_08180) fliH 1616905..1617660 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=844522 NSY31_RS08150 WP_003154263.1 1611925..1612704(+) (codY) [Bacillus velezensis strain Ag109]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=844522 NSY31_RS08150 WP_003154263.1 1611925..1612704(+) (codY) [Bacillus velezensis strain Ag109]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGTATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCACGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471