Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   VZH09_RS12400 Genome accession   NZ_CP143859
Coordinates   2475294..2477684 (+) Length   796 a.a.
NCBI ID   WP_338461781.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2470294..2482684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS12380 (VZH09_12380) - 2470858..2471172 (+) 315 WP_208674498.1 hypothetical protein -
  VZH09_RS12385 (VZH09_12385) - 2471221..2471763 (+) 543 WP_338461777.1 cupin -
  VZH09_RS12390 (VZH09_12390) - 2471847..2473337 (+) 1491 WP_338461778.1 NADH-quinone oxidoreductase subunit M -
  VZH09_RS12395 (VZH09_12395) - 2473474..2475255 (+) 1782 WP_338461779.1 mechanosensitive ion channel family protein -
  VZH09_RS12400 (VZH09_12400) mutS/mutS2 2475294..2477684 (+) 2391 WP_338461781.1 endonuclease MutS2 Machinery gene
  VZH09_RS12405 (VZH09_12405) - 2477697..2478857 (-) 1161 WP_338461782.1 citrate synthase -
  VZH09_RS12410 (VZH09_12410) sixA 2478993..2479481 (-) 489 WP_338461783.1 phosphohistidine phosphatase SixA -
  VZH09_RS12415 (VZH09_12415) - 2479485..2481164 (-) 1680 WP_338430080.1 DUF3352 domain-containing protein -
  VZH09_RS12420 (VZH09_12420) - 2481329..2481673 (+) 345 WP_338430081.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 87390.62 Da        Isoelectric Point: 6.7900

>NTDB_id=844505 VZH09_RS12400 WP_338461781.1 2475294..2477684(+) (mutS/mutS2) [Synechococcus elongatus IITB7]
MAPLLPVEQEALDLLEWPLLCSQVASFAATALARRAARSLPLASSQAESEYLLAQTAEAQALELTLPQGLPFAGVFDIGE
ALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAAEAAPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGI
RQQQRQVRSQILDRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKESVPGIVHDSSSSGSTLYIEPRSVIELNNQLRQ
LQRREEVESEAVRRRLSEAIAAVSPDLETLLAIATALDLAVARARYGLHLEANRPRFTRRDEPICLRQLRHPLLLWQQRQ
DPERSVVPVNFQLQSSLKVVAITGPNTGGKTVTLKSLGLAGLMARAGLFVPAREPVELPWFERILTDIGDEQSLQQSLST
FSGHIRRIGRILEALPTAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHATLTIATTHYGELKALKYQDDRFENASVE
FDDRSLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEGGRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLRQTE
KLHAELQAKTAELREREQSLRQQQEVAIQSEIEQARQRVAKVVRRLQQGPKSTKAERARQASETLKSLSQPTVTVVAPPP
GFQPQLGDRLRIPRLGKVGEVLAIAPDRQELTVRCGILKLTVHYGDVESLQGEKVDLPPPPPKSTTPPPAPKDAPAIRTE
RNTFDVRGSRVAEAEVVIEDALRQAIGPIWIIHGHGTGKLRQGVQQFLREHPLVAKFEAADQADGGNGVTVAYPKA

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=844505 VZH09_RS12400 WP_338461781.1 2475294..2477684(+) (mutS/mutS2) [Synechococcus elongatus IITB7]
GTGGCTCCTTTGCTCCCCGTTGAACAGGAAGCGCTCGACCTCCTTGAATGGCCGCTGCTCTGCAGTCAAGTCGCCAGTTT
TGCGGCGACAGCCTTGGCACGGCGAGCAGCGCGATCGCTGCCGTTGGCCAGCAGCCAGGCGGAGAGTGAATACCTGTTAG
CCCAGACTGCGGAAGCCCAAGCGTTGGAGTTGACGCTGCCCCAAGGTCTGCCTTTTGCTGGGGTGTTTGATATTGGCGAA
GCCCTCGCCCGCGTGGAGCGACAGGCGGTCCTCAGCGGAGAGGAACTGCTGCAAATCGCCTCCACCCTCGCTGCAATGCG
GCAATTGCGCCGCCTGATCGATGCGGCAGAAGCGGCCCCCACCCTGCAGGCGATCGTTGCTGATCTACGCACCTATCCGG
AGCTGGAACAGCAGATTCATTTCTGCATTGAAGATTCGGGGGAGGTCGCCGATCGCGCCAGTGATGCGCTGCTGGGGATT
CGCCAACAGCAACGCCAAGTCCGTAGTCAAATTCTCGATCGCCTGAATCGTCTGCTGCGCAACCAGTCCAATCTCTTTCA
GGAGCTGGTGATCAGCCGCCGCAGCGATCGCTACGTGCTGCCGGTCAAAGCGGGGCAGAAAGAGTCGGTGCCCGGCATTG
TTCACGACAGCTCCAGCAGCGGTTCAACACTCTACATTGAGCCGCGTAGTGTCATTGAACTGAATAACCAACTGCGTCAA
CTGCAGCGCCGTGAGGAAGTCGAGTCGGAGGCGGTGCGGCGGCGTCTGAGTGAGGCGATCGCGGCGGTCAGTCCAGATTT
AGAGACCCTTTTGGCGATCGCGACAGCCTTGGATTTGGCAGTGGCACGGGCGCGCTACGGCCTGCATTTAGAAGCAAATC
GACCGCGTTTTACTCGCCGTGACGAGCCGATTTGTCTCCGGCAACTGCGCCATCCCTTGCTGCTCTGGCAACAGCGCCAA
GATCCCGAACGTTCGGTGGTGCCCGTCAATTTCCAGTTGCAATCGTCGCTCAAAGTGGTGGCGATCACGGGTCCAAATAC
CGGCGGTAAAACGGTGACGCTGAAGAGCTTGGGCTTGGCGGGCTTGATGGCGCGGGCGGGCTTGTTTGTCCCTGCTCGTG
AGCCAGTGGAGTTGCCCTGGTTTGAGCGCATCCTCACCGATATTGGCGATGAGCAGTCGCTCCAGCAAAGCTTGTCAACT
TTTTCAGGCCACATCCGGCGGATTGGCCGAATCCTGGAGGCGCTGCCGACGGCGGGTGCCAGTTTAGTCCTGCTGGATGA
AGTCGGAGCGGGCACTGATCCTTCCGAGGGCAGTGCGCTGGCGATCGCGCTGCTGCGCTACTTGGCTGATCACGCCACCC
TGACGATCGCAACCACTCACTACGGCGAACTGAAGGCGCTGAAGTATCAGGACGATCGCTTCGAAAATGCCTCGGTCGAA
TTTGACGATCGCAGTCTTTCCCCCACCTATCGCTTGCTCTGGGGCATCCCCGGGCGATCGAATGCGCTGATCATTGCCGA
GCGACTGGGACTATCACCAGCAGTCGTAGCTGAGGCGCGATCGCAACTGGAAGGTGGTCGCGATCGCGATGTTGATGCGG
TGATTGCGGGGCTGGAAGCGCAACGGCGCGATCAAGAGGAGAAGGCTGCCGCCGCCGCCCAGTTGTTGCGACAGACCGAA
AAGCTACACGCCGAACTGCAAGCCAAGACTGCAGAATTACGGGAGCGAGAGCAGAGTCTGCGCCAGCAGCAGGAAGTGGC
AATCCAATCGGAAATTGAGCAGGCGCGGCAGCGGGTTGCTAAGGTGGTGCGCCGCCTCCAACAAGGCCCGAAATCAACGA
AAGCTGAGCGGGCGCGGCAGGCCAGTGAAACATTGAAGTCGCTGTCGCAACCGACGGTAACCGTCGTTGCTCCGCCGCCC
GGTTTTCAGCCCCAGTTGGGCGATCGCCTGCGGATTCCGCGGCTCGGTAAAGTCGGAGAAGTCTTGGCGATCGCGCCGGA
CCGGCAGGAATTGACCGTGCGTTGCGGCATTCTTAAGCTGACAGTCCATTACGGCGATGTGGAATCGCTCCAGGGCGAAA
AGGTGGACCTGCCCCCGCCACCGCCCAAGTCCACGACTCCGCCGCCTGCACCCAAGGATGCGCCGGCGATTCGAACCGAA
CGCAATACCTTCGATGTGCGGGGCAGTCGGGTCGCTGAAGCTGAAGTCGTGATCGAAGATGCACTGCGCCAAGCGATCGG
GCCGATCTGGATCATCCATGGCCATGGCACCGGCAAACTACGCCAAGGCGTACAGCAGTTTTTGCGCGAGCATCCCCTCG
TCGCAAAGTTTGAAGCGGCAGACCAAGCCGACGGAGGCAACGGCGTCACCGTCGCCTACCCCAAGGCCTAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(725-792)

MutS2 and Smr-associated SH3 domain (MSSS)

(647-686)

MutS domain V (MutS_V)

(342-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

36.816

100

0.372