Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QLQ02_RS19575 Genome accession   NZ_CP127833
Coordinates   3770580..3771479 (-) Length   299 a.a.
NCBI ID   WP_268450366.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3765580..3776479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS19560 xerC 3765949..3766863 (-) 915 WP_286058542.1 tyrosine recombinase XerC -
  QLQ02_RS19565 trmFO 3766931..3768238 (-) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QLQ02_RS19570 topA 3768314..3770389 (-) 2076 WP_029441257.1 type I DNA topoisomerase -
  QLQ02_RS19575 dprA 3770580..3771479 (-) 900 WP_268450366.1 DNA-processing protein DprA Machinery gene
  QLQ02_RS19580 sucD 3771540..3772442 (-) 903 WP_010334236.1 succinate--CoA ligase subunit alpha -
  QLQ02_RS19585 sucC 3772471..3773628 (-) 1158 WP_010334235.1 ADP-forming succinate--CoA ligase subunit beta -
  QLQ02_RS19590 - 3773802..3774083 (-) 282 WP_168747814.1 FlhB-like flagellar biosynthesis protein -
  QLQ02_RS19595 - 3774080..3775810 (-) 1731 WP_286058543.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.19 Da        Isoelectric Point: 8.7232

>NTDB_id=844481 QLQ02_RS19575 WP_268450366.1 3770580..3771479(-) (dprA) [Bacillus mojavensis strain KRS009]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCALETASHGKVKTAALKNKIEEQYPKLQHLLSVYHQQGIEVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEYMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPERNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=844481 QLQ02_RS19575 WP_268450366.1 3770580..3771479(-) (dprA) [Bacillus mojavensis strain KRS009]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAATCAATTATTATCCCCATCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGCGCATTAGAAACCGCTTCACATGGCAAAGTAAAGACTGCGGCAT
TAAAAAATAAAATAGAAGAACAATATCCCAAACTTCAGCATTTACTCTCTGTATACCATCAGCAAGGCATTGAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCTGTGCTGTTTGCAAAAGGTGATAT
TTCCCTTCTTTCTCAAGGGCGTAAAATAGGAATTGTAGGTACGCGGCATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCG
GCAAGTATTAAGGCGAAGGGGCGTACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAATACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATTATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGTAAAGAGAAAAGCGGTTCTTTGATT
ACCGCATATCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCTGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATCCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAGAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.278

100

0.833