Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QLQ02_RS19545 Genome accession   NZ_CP127833
Coordinates   3763153..3763932 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus mojavensis strain KRS009     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3758153..3768932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS19515 fliH 3758168..3758920 (-) 753 WP_010334247.1 flagellar assembly protein FliH -
  QLQ02_RS19520 fliG 3758913..3759929 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QLQ02_RS19525 fliF 3759942..3761552 (-) 1611 WP_268505686.1 flagellar basal-body MS-ring/collar protein FliF -
  QLQ02_RS19530 fliE 3761598..3761918 (-) 321 WP_029441259.1 flagellar hook-basal body complex protein FliE -
  QLQ02_RS19535 flgC 3761929..3762381 (-) 453 WP_010334245.1 flagellar basal body rod protein FlgC -
  QLQ02_RS19540 flgB 3762381..3762770 (-) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  QLQ02_RS19545 codY 3763153..3763932 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QLQ02_RS19550 hslU 3763971..3765374 (-) 1404 WP_286058541.1 HslU--HslV peptidase ATPase subunit -
  QLQ02_RS19555 clpQ 3765391..3765936 (-) 546 WP_010334241.1 ATP-dependent protease subunit ClpQ -
  QLQ02_RS19560 xerC 3765949..3766863 (-) 915 WP_286058542.1 tyrosine recombinase XerC -
  QLQ02_RS19565 trmFO 3766931..3768238 (-) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=844480 QLQ02_RS19545 WP_003220850.1 3763153..3763932(-) (codY) [Bacillus mojavensis strain KRS009]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=844480 QLQ02_RS19545 WP_003220850.1 3763153..3763932(-) (codY) [Bacillus mojavensis strain KRS009]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTTCTCGGGTACTCTATCA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAATAGTGAGTATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
CGAACACATCTTTGAAGAGCTTGACGGAAATGAAGGCCTTCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACTC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGTGCTGGGGTAATTGAGTCAAGATCATTAGGCATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCGCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467