Detailed information NTG0844480

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VZH09_RS06380
• Genome accession: NZ_CP143859
• Coordinates: 1329411..1330643 (-)
• Length: 410 a.a.
• NCBI ID: WP_338462946.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1324411..1335643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZH09_RS06360 (VZH09_06360)	rfbC	1325519..1326070 (-)	552	WP_208676353.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
VZH09_RS06365 (VZH09_06365)	dusA	1326597..1327610 (-)	1014	WP_338463023.1	tRNA dihydrouridine(20/20a) synthase DusA	-
VZH09_RS06370 (VZH09_06370)	-	1327637..1328869 (+)	1233	WP_338462944.1	NAD(P)/FAD-dependent oxidoreductase	-
VZH09_RS06375 (VZH09_06375)	-	1328849..1329406 (-)	558	WP_338462945.1	hypothetical protein	-
VZH09_RS06380 (VZH09_06380)	pilC	1329411..1330643 (-)	1233	WP_338462946.1	type II secretion system F family protein	Machinery gene
VZH09_RS06385 (VZH09_06385)	pilT	1330667..1331755 (-)	1089	WP_338462947.1	type IV pilus twitching motility protein PilT	Machinery gene
VZH09_RS06390 (VZH09_06390)	pilB/pilB1	1331827..1333827 (-)	2001	WP_338462948.1	GspE/PulE family protein	Machinery gene
VZH09_RS06395 (VZH09_06395)	grpE	1334113..1334736 (+)	624	WP_338462949.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45220.19 Da
• Isoelectric Point: 5.2885

>NTDB_id=844480 VZH09_RS06380 WP_338462946.1 1329411..1330643(-) (pilC) [Synechococcus elongatus IITB7]
MPTFVAQVRDSHGAIRELRIRSGNVRQARVELRQMGLVIQTIDESVGFSLANLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKALRQINLDVQEGLNLSDSMRKFPNIFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLFLLSISETLRTPIFWGLFLVFLFGST
FVFKQYYATPLGCLSVDSMILRLPILGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIAQSIDAARMEVQ
TGGMMSVALARYRIFPMMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=844480 VZH09_RS06380 WP_338462946.1 1329411..1330643(-) (pilC) [Synechococcus elongatus IITB7]
ATGCCAACTTTTGTTGCTCAAGTTCGTGACAGCCATGGTGCTATCCGTGAACTGCGCATTCGATCTGGCAACGTTCGTCA
AGCGCGTGTTGAGCTGCGCCAGATGGGCTTGGTTATCCAAACCATTGATGAGTCAGTCGGATTCTCTCTCGCTAATCTCA
GTAGCTTCAATTTGGAAGAGGCGACAAGTAAAGTCACGGTAAAAGATATGGCTTTGTTTTCTCGCCAGCTATCTTCACTG
GTAGACGCAGGTGTTCCGATCGTCAGAGCCTTAGGGCTGCTAACAGAGCAAACCCGTAATCCTAAGCTTAGAAAAGCACT
CAGACAGATTAATCTTGATGTTCAAGAAGGTCTGAATCTTTCAGATTCAATGCGTAAGTTTCCTAATATCTTTGATGGTT
TATACGTTGCTATGATTCAAGCTGGCGAAACGGGGGGGGTGTTGGATGATGTTTTAAACCGGCTTTCTAAATTACTGGAA
GATATGTCTCGGCTTCGCAACCAGATGAAATCGGCGATGACCTATCCAATGGCAGTTTTTGTTATTGCCATTCTTGTTTT
TCTAGGTATGACAATCTTTATCATTCCTACATTCGCAGGAATTTTTGAAGATCAAGGTGCAGAGCTTCCAGGCTTTACAT
TATTTCTACTATCGATTAGTGAGACGTTAAGGACACCAATTTTTTGGGGACTGTTCCTGGTCTTCTTATTTGGTTCTACT
TTTGTCTTTAAACAGTACTATGCAACTCCACTTGGGTGTCTCAGTGTAGATAGTATGATTTTGCGTCTGCCTATCTTGGG
AGAAATGATTCAAAAGGCAGCAACAGCTCGCTTTTGTCGAACTTTTGGCTCGCTGACACGGGCAGGAGTTCCTATCATGA
CTGCGCTCGAAATCGTACGAGATACCGCAGGTAATCAAGCGATCGCCCAATCAATTGATGCTGCCCGAATGGAAGTGCAA
ACTGGTGGAATGATGAGTGTGGCTCTAGCACGCTATCGAATCTTTCCAATGATGGCCTTGAGTATGATTACGATTGGAGA
GGAGACGGGTGAGCTAGACACAATGGTCAATAAAGTTGCCGACTTTTATGAAGATGAAGTGGAACAAGCTGTTAAGGGCC
TGACAAGTCTGTTGGAGCCAATTATGATTGTTCTAGTCGGCGGTATCGTTGGCTCAATCCTGCTGGCAATGTATTTGCCA
ATGTTTAGCATTTTCGATCAGATCAAAGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	41.728	98.78	0.412