Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QLQ02_RS14590 Genome accession   NZ_CP127833
Coordinates   2861842..2864238 (+) Length   798 a.a.
NCBI ID   WP_286058252.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2856842..2869238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS14565 - 2856923..2858188 (-) 1266 WP_010335115.1 replication-associated recombination protein A -
  QLQ02_RS14570 cymR 2858390..2858806 (+) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  QLQ02_RS14575 - 2858826..2859968 (+) 1143 WP_286058250.1 cysteine desulfurase family protein -
  QLQ02_RS14580 mnmA 2859997..2861112 (+) 1116 WP_286058251.1 tRNA 2-thiouridine(34) synthase MnmA -
  QLQ02_RS14585 - 2861197..2861817 (+) 621 WP_238933066.1 tetratricopeptide repeat protein -
  QLQ02_RS14590 recD2 2861842..2864238 (+) 2397 WP_286058252.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QLQ02_RS14595 - 2864341..2864820 (+) 480 WP_229146667.1 PRC-barrel domain-containing protein -
  QLQ02_RS14600 - 2864831..2865022 (+) 192 WP_010335110.1 hypothetical protein -
  QLQ02_RS14605 - 2865044..2865178 (+) 135 WP_010335109.1 YrzQ family protein -
  QLQ02_RS14610 - 2865292..2866353 (+) 1062 WP_024122303.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89020.64 Da        Isoelectric Point: 5.0274

>NTDB_id=844460 QLQ02_RS14590 WP_286058252.1 2861842..2864238(+) (recD2) [Bacillus mojavensis strain KRS009]
MQQHPDQLKMEEEPFLKGTVNTVIYHNDANLYTVLKVKVTETSEAIEDKVVSVTGYFPALQEEETYTFYGKTVTHPKFGL
QFQAEHFKKEIPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGDRAINKILADSSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVRDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETKQLIIETQTLLNQSAADGQRIAEMDAANAIIALGENKDIVIEDERCYFPSLFFAEQNVAKRVKQIASQT
EYDDQFPESEFLMALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSDYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHEMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSAQAAEMDAELAALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=844460 QLQ02_RS14590 WP_286058252.1 2861842..2864238(+) (recD2) [Bacillus mojavensis strain KRS009]
GTGCAGCAGCACCCGGATCAGCTGAAAATGGAGGAGGAGCCCTTTTTAAAAGGGACAGTAAACACCGTCATTTATCATAA
TGACGCCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGTCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAAACCGTTACTCACCCAAAGTTCGGACTG
CAATTTCAAGCTGAGCATTTCAAAAAGGAGATCCCGACAACAAAAGAAGGCGTCATTCAGTATTTGTCGAGCGATCTGTT
TGAAGGAATCGGTAAAAAAACCGCTGAAGAGATTGTGAAAAAACTGGGTGACAGAGCGATTAATAAAATTTTGGCTGATT
CTTCAGTCCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGACACCCTTGCCGGTGCCCTGCAGCGGCATCAGGGA
CTGGAGCAAATTATGATTTCGCTGAATCAATTTGGCTTCGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTGGAAAAAATTCAGGAGAACCCTTATCAGCTTGTGAGAGACGTGGAAGGCATCGGGTTTGGAAAAGCAGATG
AGCTCGGCGGAAGAATGGGGCTCTCAGGGAATCATCCTGAGCGGGTAAAAGCGGCTATTTTATACACGCTAGAAACGACA
TGCCTGTCAGAAGGGCATACGTACATAGAAACAAAACAGCTGATTATCGAAACCCAAACGCTGTTAAACCAGTCAGCGGC
AGATGGGCAGCGCATTGCAGAAATGGATGCCGCTAACGCGATTATTGCGCTTGGAGAAAATAAGGATATTGTTATAGAAG
ATGAACGATGTTACTTTCCGTCGCTGTTTTTCGCTGAACAAAATGTGGCAAAGCGTGTGAAACAGATCGCAAGCCAAACT
GAATATGACGACCAGTTTCCAGAATCAGAATTTCTGATGGCTTTGGGAGAATTGGAAGAGCGTATGAATGTTCAGTACGC
GCCGAGTCAGAAGGAAGCGATACAAAAAGCGCTGTCGTCACCGATGCTTCTTTTAACGGGAGGACCGGGTACAGGAAAAA
CAACGGTAATCAGAGGCATTGTGGAATTGTATGGAGAACTTCACGGTGTTTCACTTGATCCGTCGGATTATAAAAAAGAT
GAAGCCTTTCCGATTGTGCTGGCCGCGCCTACAGGCAGAGCGGCGAAACGAATGAGTGAGTCAACTGGTCTTCCGGCTGT
TACGATACACCGGCTGCTCGGCTGGAACGGTGCGGAAGGATTTACTCATACAGAGGACCAGCCGATTGAAGGGAAGCTTT
TGATTATCGATGAAGCGAGTATGCTTGATATATGGCTTGCGAATCATTTGTTTAAAGCGATCCCTGATCATATTCAAATT
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGACCCGGTCAAGTGCTCAGAGACCTTTTGGCATCCCAGGTGAT
TCCGACTGTAAGACTGACAGACATTTATCGACAAGCGGAAGGATCGTCCATTGTCGAGCTTGCCCACGAGATGAAAAACG
GTCTGCTTCCAAACAACCTGACTGCCCCGACAAAGGATCGCTCCTTTATTCGCTGCGGTGGTTCGCAAATTAAAGAAGTG
GTTGAGAAGGTTGTCGCGAATGCATTGAAAAAAGGATATACGGCAAAAGATATTCAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCTGGAATCAATGAACTGAATGTGATGCTGCAGGATATTTTAAACCCTCCAAAAGAAAAGCGGAGGGAAATTAAGT
TCGGCGACGTTGTCTATAGAACCGGGGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTTAACGGCGAC
ATTGGAGAAATCACTTCCATTTTCTATGCGAAGGAAAACACAGAAAAAGAAGACATGGCTGTTGTCTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTCAGTCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGCAGTG
AATTTCCGATCGTGGTTCTTCCTGTAGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTATATACCGCTATCACG
AGGGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACCTCACTAAAAAACAGGCTGTCAGCGCAGGCGGCTGAAATGGATGCTGAGCTTGCAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTGCACGACGCAAATATCGGAATGGAAGGCATTACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

96.11

99.875

0.96