Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QLQ02_RS14515 Genome accession   NZ_CP127833
Coordinates   2844749..2847109 (+) Length   786 a.a.
NCBI ID   WP_286058245.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2839749..2852109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS14495 - 2841064..2841360 (+) 297 WP_010335127.1 post-transcriptional regulator -
  QLQ02_RS14500 secDF 2841398..2843611 (+) 2214 WP_286058244.1 protein translocase subunit SecDF -
  QLQ02_RS14505 - 2843772..2844269 (+) 498 WP_010335126.1 cation:proton antiporter regulatory subunit -
  QLQ02_RS14510 - 2844347..2844682 (+) 336 WP_010335125.1 lipopolysaccharide assembly LapA domain-containing protein -
  QLQ02_RS14515 recJ 2844749..2847109 (+) 2361 WP_286058245.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QLQ02_RS14520 - 2847115..2847627 (+) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  QLQ02_RS14525 relA 2847795..2849999 (+) 2205 WP_010335122.1 GTP diphosphokinase -
  QLQ02_RS14530 dtd 2850012..2850452 (+) 441 WP_229146639.1 D-aminoacyl-tRNA deacylase -
  QLQ02_RS14535 - 2850479..2852032 (-) 1554 WP_286058246.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88363.87 Da        Isoelectric Point: 5.0161

>NTDB_id=844459 QLQ02_RS14515 WP_286058245.1 2844749..2847109(+) (recJ) [Bacillus mojavensis strain KRS009]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGEWPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDQFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADHTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLGCVGFNKGELEENTVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETKALLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=844459 QLQ02_RS14515 WP_286058245.1 2844749..2847109(+) (recJ) [Bacillus mojavensis strain KRS009]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCGAGACTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCAGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCCAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGAGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
GGCCAGATGAACTTCTTGACCTGGCGGCAATTGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTGGGCTTAAAAGAGCTGATTAAGCTCTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGGCTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATCTGTTGATGTCAGAGGACCAGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCAATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATTAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAGGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACCATACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTACTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGGCTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATACTGTGCCCGGTT
CAAAAATTTCGATTGTTGGCGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCTCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGCGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCCGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCTAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.257

100

0.933