Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   VZG28_RS13120 Genome accession   NZ_CP143853
Coordinates   2601465..2603855 (+) Length   796 a.a.
NCBI ID   WP_338441531.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596465..2608855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS13100 (VZG28_13100) - 2597029..2597343 (+) 315 WP_208674498.1 hypothetical protein -
  VZG28_RS13105 (VZG28_13105) - 2597392..2597934 (+) 543 WP_208674496.1 cupin -
  VZG28_RS13110 (VZG28_13110) - 2598018..2599508 (+) 1491 WP_338441529.1 NADH-quinone oxidoreductase subunit M -
  VZG28_RS13115 (VZG28_13115) - 2599645..2601426 (+) 1782 WP_338441530.1 mechanosensitive ion channel family protein -
  VZG28_RS13120 (VZG28_13120) mutS/mutS2 2601465..2603855 (+) 2391 WP_338441531.1 endonuclease MutS2 Machinery gene
  VZG28_RS13125 (VZG28_13125) - 2603867..2605024 (-) 1158 WP_338441532.1 citrate synthase -
  VZG28_RS13130 (VZG28_13130) sixA 2605130..2605648 (-) 519 WP_338441533.1 phosphohistidine phosphatase SixA -
  VZG28_RS13135 (VZG28_13135) - 2605652..2607331 (-) 1680 WP_338441534.1 DUF3352 domain-containing protein -
  VZG28_RS13140 (VZG28_13140) - 2607495..2607839 (+) 345 WP_338441535.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 87412.62 Da        Isoelectric Point: 6.8756

>NTDB_id=844456 VZG28_RS13120 WP_338441531.1 2601465..2603855(+) (mutS/mutS2) [Synechococcus elongatus IITB4]
MAPLLPVEQEALDLLEWPLLCSQVASFAATALARRAARSLPLASSQAESEYLLAQTAEAQALELTLPQGLPFAGVFDIGE
ALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAAETAPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGI
RQQQRQVRSQILDRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKEAVPGIVHDSSSSGSTLYIEPRSVIELNNQLRQ
LQRREEVESEAVRRRLSEAIAAVSADLETLLAIATALDLAVARARYGLHLEANRPRFTRRDEPICLRQLRHPLLLWQQRQ
DPDRSVVPVNFQLQSSLKVVAITGPNTGGKTVTLKSLGLAGLMARAGLFVPAREPVELPWFERILTDIGDEQSLQQSLST
FSGHIRRIGRILEALPTAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHATLTIATTHYGELKALKYQDDRFENASVE
FDDRSLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEGGRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLRQTE
KLHAELQAKTAELREREQSLRQQQEVAIQSEIEQARQRVAKVVRRLQQGPKSTKAERARQASETLKSLSQPTTTVVAPPP
GFQPQLGDRLRIPRLGKVGEVLAIAPDRQELTVRCGILKLTVHYGDVESLQGEKVDLPPPPPKSTTPPPAPKDAPAIRTD
RNTFDVRGSRVAEAEVVIEDALRQAIGPIWIIHGHGTGKLRHGVHQFLREHPLVAKFEAADQADGGNGVTVAYLKP

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=844456 VZG28_RS13120 WP_338441531.1 2601465..2603855(+) (mutS/mutS2) [Synechococcus elongatus IITB4]
GTGGCTCCTTTGCTCCCCGTTGAACAGGAAGCGCTCGACCTCCTTGAATGGCCGCTGCTCTGCAGCCAAGTCGCCAGTTT
TGCAGCGACAGCCTTGGCACGGCGGGCAGCGCGATCGCTGCCGTTGGCCAGCAGCCAAGCGGAGAGTGAATACCTGCTAG
CCCAGACTGCGGAAGCCCAAGCATTGGAGTTGACGCTACCCCAAGGTCTGCCTTTTGCCGGGGTGTTTGATATCGGCGAA
GCCCTCGCCCGCGTAGAGCGACAGGCGGTCCTCAGCGGAGAGGAACTGCTGCAAATCGCCTCCACCCTCGCTGCAATGCG
GCAATTGCGCCGACTGATCGACGCGGCAGAAACGGCTCCCACCCTGCAGGCGATCGTTGCTGATCTACGCACCTATCCGG
AGCTGGAACAGCAGATTCATTTCTGCATTGAAGATTCGGGGGAGGTCGCCGATCGCGCCAGTGATGCGCTGCTGGGGATT
CGCCAACAGCAACGCCAAGTCCGTAGCCAAATTCTCGATCGCCTGAATCGTTTGCTGCGCAACCAGTCCAATCTCTTTCA
GGAGTTGGTCATCAGCCGTCGCAGCGATCGCTATGTGCTGCCGGTCAAAGCGGGGCAGAAAGAGGCGGTGCCCGGCATTG
TTCACGACAGCTCCAGCAGCGGTTCAACGCTCTACATTGAGCCGCGCAGTGTCATTGAACTGAACAACCAGCTGCGTCAA
CTGCAGCGCCGTGAAGAAGTCGAGTCGGAGGCGGTGCGACGGCGTCTGAGTGAAGCGATCGCGGCGGTCAGTGCTGATTT
AGAGACCCTTTTGGCGATCGCGACAGCCTTGGATTTGGCGGTGGCGCGGGCGCGCTACGGCCTGCATTTAGAAGCAAATC
GACCGCGTTTTACTCGCCGTGACGAGCCGATTTGTCTGCGGCAACTGCGCCATCCCTTGCTGCTCTGGCAACAGCGCCAA
GATCCCGATCGCTCGGTGGTGCCTGTCAATTTCCAGTTGCAATCGTCGCTCAAAGTGGTGGCGATCACGGGGCCAAATAC
CGGCGGTAAAACGGTAACGCTGAAGAGCTTAGGTCTGGCCGGCTTGATGGCGCGGGCAGGCTTGTTTGTCCCTGCTCGTG
AGCCAGTGGAGTTGCCCTGGTTTGAGCGCATCCTCACCGATATTGGCGATGAGCAGTCGCTCCAGCAAAGCCTTTCGACC
TTTTCGGGACATATCCGCCGGATTGGCCGAATTCTGGAGGCGCTGCCGACGGCGGGGGCTAGTTTAGTCCTGCTGGATGA
AGTTGGGGCAGGCACTGATCCTTCCGAGGGCAGTGCACTGGCGATCGCGCTGCTGCGCTACTTGGCCGATCACGCCACCC
TGACGATCGCAACCACTCACTACGGCGAACTGAAGGCGCTGAAGTATCAGGACGATCGCTTCGAAAATGCCTCAGTCGAA
TTTGACGATCGCAGTCTTTCCCCCACCTATCGCTTGCTCTGGGGCATCCCTGGGCGATCGAATGCGCTAATCATTGCCGA
GCGACTGGGTCTATCACCAGCAGTCGTAGCTGAGGCGCGATCGCAACTGGAAGGTGGCCGCGATCGCGATGTTGATGCGG
TAATTGCAGGGCTGGAAGCGCAACGGCGCGATCAAGAGGAGAAGGCTGCCGCCGCCGCCCAGTTGTTGCGACAAACCGAA
AAGCTACACGCCGAACTGCAAGCCAAGACTGCAGAATTGCGGGAGCGAGAGCAGAGTCTGCGCCAGCAGCAAGAAGTGGC
AATCCAGTCGGAAATTGAGCAGGCGCGGCAACGGGTTGCCAAGGTGGTGCGCCGCCTCCAACAAGGCCCGAAATCAACGA
AAGCTGAACGTGCACGGCAGGCGAGTGAAACATTGAAGTCGCTGTCGCAACCGACGACAACCGTCGTTGCACCGCCGCCC
GGTTTTCAGCCACAGTTGGGCGATCGCCTGCGGATTCCGCGGCTCGGTAAAGTCGGAGAAGTCCTAGCGATCGCGCCGGA
CCGGCAGGAATTGACCGTGCGTTGCGGCATTCTCAAGCTGACAGTCCATTACGGCGATGTGGAATCGCTCCAAGGCGAAA
AGGTGGACCTGCCCCCGCCACCGCCCAAGTCCACGACTCCGCCGCCCGCGCCCAAGGATGCGCCGGCGATTCGAACCGAT
CGCAATACCTTCGATGTACGGGGCAGTCGGGTCGCTGAAGCTGAAGTCGTGATCGAAGATGCACTTCGCCAAGCGATCGG
GCCGATCTGGATCATCCATGGCCATGGCACGGGCAAATTGCGCCACGGTGTTCACCAGTTTTTGCGTGAACATCCGCTTG
TTGCAAAGTTTGAAGCTGCAGACCAAGCGGATGGTGGCAACGGTGTGACCGTCGCCTATCTCAAGCCCTAG

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(647-686)

MutS domain V (MutS_V)

(342-523)

Smr domain (Smr)

(725-795)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

36.634

100

0.372