Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QPK35_RS00345 Genome accession   NZ_CP127832
Coordinates   71338..72162 (+) Length   274 a.a.
NCBI ID   WP_290033501.1    Uniprot ID   -
Organism   Ligilactobacillus cholophilus strain BD7642     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 66338..77162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK35_RS00320 - 66643..68013 (-) 1371 WP_290033496.1 HD domain-containing protein -
  QPK35_RS00325 - 68281..68595 (+) 315 WP_290033497.1 DUF1934 domain-containing protein -
  QPK35_RS00330 rpoE 68640..69179 (+) 540 WP_290033498.1 DNA-directed RNA polymerase subunit delta -
  QPK35_RS00335 - 69339..70940 (+) 1602 WP_290033499.1 CTP synthase -
  QPK35_RS00340 - 71016..71234 (+) 219 WP_290033500.1 LBP_cg2779 family protein -
  QPK35_RS00345 endA 71338..72162 (+) 825 WP_290033501.1 DNA/RNA non-specific endonuclease Machinery gene
  QPK35_RS00350 - 72282..73550 (+) 1269 WP_290033502.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QPK35_RS00355 rho 73567..74892 (+) 1326 WP_290033503.1 transcription termination factor Rho -
  QPK35_RS00360 - 75004..75255 (+) 252 WP_290033504.1 type B 50S ribosomal protein L31 -
  QPK35_RS00365 trxA 75371..75685 (+) 315 WP_290033505.1 thioredoxin -
  QPK35_RS00370 trxB 75700..76629 (+) 930 WP_290033506.1 thioredoxin-disulfide reductase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 30147.68 Da        Isoelectric Point: 10.2191

>NTDB_id=844386 QPK35_RS00345 WP_290033501.1 71338..72162(+) (endA) [Ligilactobacillus cholophilus strain BD7642]
MAKRKKKQKVTPAQTIITILTAILIVLCGGRATGQFSNINLGYSQNVKTSQNTPNKELASSVLTDNVKKQLGNSIVYNGH
GAFIINNNKNDLNAHISSAPYAVNEVDELGRAHIGNAWLNKTSRQYKSREKTGNGRTSWKPKGFHQLTNLPGEYKHAYDR
GHLLGYALVGGVRGFNASESNEANIATQTAWANEARSKNSTGQNYYEGLVRKALDQNKQVRYRVTDVYDGNNVIPSGAHL
EAKSSDGSLEFNVFVPNVQTNIKINYETGYATKN

Nucleotide


Download         Length: 825 bp        

>NTDB_id=844386 QPK35_RS00345 WP_290033501.1 71338..72162(+) (endA) [Ligilactobacillus cholophilus strain BD7642]
ATGGCAAAGCGAAAAAAGAAACAAAAAGTAACACCTGCACAAACAATTATTACTATTTTAACTGCAATATTAATTGTTTT
ATGTGGTGGAAGAGCTACAGGACAGTTCTCAAATATTAATTTAGGATATTCACAAAACGTAAAAACAAGTCAAAATACTC
CTAACAAAGAATTAGCGTCAAGTGTTTTAACAGATAATGTAAAAAAACAATTAGGTAATTCGATTGTATATAATGGTCAT
GGTGCATTTATTATTAATAATAATAAAAATGATTTGAATGCTCATATTTCAAGTGCCCCTTATGCAGTGAATGAAGTAGA
TGAATTGGGACGAGCACATATTGGTAATGCATGGTTAAATAAGACTTCGCGTCAATATAAGAGTCGTGAAAAAACAGGAA
ATGGTCGAACAAGTTGGAAACCAAAGGGATTTCATCAATTGACGAATCTTCCTGGAGAATATAAACATGCATATGATCGT
GGTCATTTATTAGGTTATGCACTAGTTGGGGGAGTTCGTGGATTTAATGCATCAGAATCAAATGAGGCTAATATTGCAAC
GCAGACAGCGTGGGCAAATGAAGCTCGTAGTAAAAATTCAACAGGCCAAAATTATTATGAAGGTCTAGTACGAAAAGCAT
TAGATCAAAATAAGCAAGTACGTTATCGAGTAACAGATGTTTATGATGGCAATAATGTAATCCCATCTGGAGCACATCTT
GAAGCTAAATCTTCAGATGGTTCATTAGAATTTAATGTATTTGTTCCTAATGTACAGACTAATATTAAAATTAATTATGA
AACAGGTTACGCTACAAAAAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.079

83.577

0.485
  endA Streptococcus pneumoniae D39

58.079

83.577

0.485
  endA Streptococcus pneumoniae R6

58.079

83.577

0.485
  endA Streptococcus pneumoniae TIGR4

58.079

83.577

0.485