Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QRY57_RS21740 Genome accession   NZ_CP127376
Coordinates   3893290..3895629 (-) Length   779 a.a.
NCBI ID   WP_286016065.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3888290..3900629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS21720 (QRY57_21725) - 3889521..3889697 (-) 177 WP_003200475.1 hypothetical protein -
  QRY57_RS21725 (QRY57_21730) dtd 3889872..3890312 (-) 441 WP_090687615.1 D-aminoacyl-tRNA deacylase -
  QRY57_RS21730 (QRY57_21735) relA 3890330..3892516 (-) 2187 WP_026593480.1 GTP diphosphokinase -
  QRY57_RS21735 (QRY57_21740) - 3892730..3893242 (-) 513 WP_026593481.1 adenine phosphoribosyltransferase -
  QRY57_RS21740 (QRY57_21745) recJ 3893290..3895629 (-) 2340 WP_286016065.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QRY57_RS21745 (QRY57_21750) - 3895753..3896646 (-) 894 WP_026593483.1 cation diffusion facilitator family transporter -
  QRY57_RS21750 (QRY57_21755) secDF 3896855..3899119 (-) 2265 WP_286016066.1 protein translocase subunit SecDF -
  QRY57_RS21755 (QRY57_21760) - 3899475..3899759 (-) 285 WP_286016067.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87887.51 Da        Isoelectric Point: 5.0254

>NTDB_id=843797 QRY57_RS21740 WP_286016065.1 3893290..3895629(-) (recJ) [Bacillus arachidis strain YX15]
MLQPKTRWKEKSFNEEQISELASKLQLSPLVTSLFLGRGLDTEDKIVDFLNTAGQEFHDPFLLEGMDRTVERVKQAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKIAKEL
GMDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDATPAVHLLLSEDPEEAKELAEEIDEMNKL
RKDIVKQITEEAIAEVENNYPPADNKVLVIAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILKPEDFIPITTVDAICKVEDVTLSAIEEMQKLAPFGV
GNPKPRIAVRDAELESIRAIGSDGSHLKMALRGGQATLDTIGFGFGAYAKEISPIAHVSIVGEASINEWNNFKKPQLMIQ
DIAVDAWQLFDWRSMRNVESNLSEIPKEQVTMVYFSEEVLNKFSLEEYKEQLMHASEVTELDGRYVILMDLPKSTDELRG
LFKVGFPARIYTLFYQENNHLFSTVPTREHFKWYYSFLHQKAPFSLRQHGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEGMKKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFDTIRNHKEVAQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=843797 QRY57_RS21740 WP_286016065.1 3893290..3895629(-) (recJ) [Bacillus arachidis strain YX15]
ATGTTACAACCGAAGACGCGTTGGAAAGAAAAGTCATTTAATGAAGAGCAGATAAGTGAGTTGGCAAGTAAATTGCAATT
ATCACCGCTTGTTACTTCGTTATTCCTCGGTAGAGGCTTAGATACAGAAGATAAGATTGTGGATTTTTTAAATACAGCAG
GGCAAGAATTTCACGATCCATTTTTACTTGAAGGAATGGATCGTACGGTAGAACGTGTAAAGCAAGCCATTCAAAATGGA
GAACAAATTTTAATTTTTGGTGACTACGATGCCGATGGTGTAAGTAGTACGACAGTATTATACCTTGCACTTCAAGAACT
AGGTGCGGATGTTGAGTTCTATATCCCGAACCGATTTACGGAAGGGTATGGACCGAATGAAGAGGCATTTCGCTGGGCAC
ACAGTGCGGGATTTTCTCTTATCATTACTGTTGATACAGGTATCGCAGCAGTTCATGAAGCTAAGATAGCAAAAGAGCTT
GGTATGGATCTTATTATTACAGATCATCATGAGCCACCACCAGAACTTCCAGAAGCGCTTGCGATTATTCATCCGAAGCT
AGAGGGAGGCGTCTATCCGTTTCATTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTAGCGCATGCATTACTTGGACGTG
TACCGGAACATTTGTTAGAAATTGCAGTGATTGGTACGGTAGCCGATTTAGTGTCACTTCATGGTGAAAATAGATTACTT
GTGCAGCGTGGACTAAAACAAATGAGAATGACCAAAAATATTGGTTTGAAAGCATTGTTTAAAGTAGCAAATGTTTCACA
AAGCGAGATCACGGAAGAAAGCATCGGCTTCTCGATTGCACCGCGTATTAATGCAATTGGTCGTTTAGAAGATGCGACAC
CGGCTGTTCATCTTCTTTTATCAGAGGATCCAGAAGAAGCAAAAGAGCTTGCTGAAGAAATCGATGAAATGAATAAGCTT
CGAAAAGATATTGTAAAACAAATTACAGAAGAGGCGATTGCAGAGGTAGAAAACAACTATCCTCCAGCGGACAATAAAGT
ATTAGTCATTGCGAAAGAAGGATGGAATCCAGGTGTGATAGGGATTGTTGCTTCTAAATTAGTAGAGCGTTTCTATCGTC
CAACAATCGTGTTATGTATTGATCCTGAGAAGCAAACAGCAAAAGGATCTGCTCGTAGTATTGCAGGATTTGATTTGTTT
GCGAACTTATCAGATTGTAGAGAATTGTTACCTCACTTTGGTGGGCATCCAATGGCGGCAGGAATGACGCTTCATATGAA
TGATGTGGATGAACTGCGCCGTCGTTTAAATGAACAAGCAGATGCAATCTTAAAGCCTGAAGATTTTATTCCGATTACAA
CAGTTGATGCGATTTGCAAAGTAGAGGATGTAACGCTTTCGGCAATTGAAGAAATGCAAAAACTAGCGCCATTTGGTGTT
GGAAATCCGAAGCCGCGTATCGCAGTTAGAGATGCGGAATTAGAAAGTATTCGTGCAATTGGATCTGATGGGTCTCATTT
AAAAATGGCACTTCGCGGAGGACAGGCGACGTTAGATACGATTGGATTTGGATTTGGAGCTTATGCGAAAGAAATTTCTC
CAATCGCTCACGTTTCTATTGTTGGTGAGGCATCAATTAATGAATGGAATAATTTCAAAAAACCACAACTCATGATTCAA
GATATTGCGGTAGATGCATGGCAGTTGTTTGATTGGCGCAGCATGCGTAATGTGGAATCGAACTTATCAGAGATTCCGAA
AGAACAAGTAACAATGGTGTATTTTTCTGAAGAGGTATTAAATAAATTTTCTTTAGAAGAATATAAAGAACAACTTATGC
ATGCTTCAGAAGTCACTGAGCTAGATGGTCGCTATGTTATTTTGATGGATTTACCAAAGTCAACAGACGAATTACGCGGT
TTGTTTAAGGTGGGATTTCCAGCGCGAATTTATACACTGTTTTATCAGGAGAATAATCATTTATTTAGTACAGTTCCAAC
AAGGGAACACTTTAAATGGTACTATTCCTTTTTACACCAAAAGGCACCATTTTCTTTAAGACAACATGGGGAACAGTTAT
GTCGTCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCAGAAGGAATGAAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CCTTCAATTAGAGAAAGAGTTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGACACGATTCGTAATCATAAAG
AAGTAGCACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526