Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QRY57_RS21670 Genome accession   NZ_CP127376
Coordinates   3876859..3879195 (-) Length   778 a.a.
NCBI ID   WP_286016062.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3871859..3884195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS21650 (QRY57_21655) - 3874880..3875938 (-) 1059 WP_026593468.1 AI-2E family transporter -
  QRY57_RS21655 (QRY57_21660) - 3876123..3876335 (+) 213 WP_208018124.1 hypothetical protein -
  QRY57_RS21660 (QRY57_21665) - 3876382..3876510 (-) 129 WP_001102898.1 YrzQ family protein -
  QRY57_RS21665 (QRY57_21670) - 3876529..3876717 (-) 189 WP_000490499.1 hypothetical protein -
  QRY57_RS21670 (QRY57_21675) recD2 3876859..3879195 (-) 2337 WP_286016062.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QRY57_RS21675 (QRY57_21680) - 3879299..3879958 (-) 660 WP_026593471.1 tetratricopeptide repeat protein -
  QRY57_RS21680 (QRY57_21685) mnmA 3880069..3881184 (-) 1116 WP_208018213.1 tRNA 2-thiouridine(34) synthase MnmA -
  QRY57_RS21685 (QRY57_21690) - 3881201..3882346 (-) 1146 WP_286016063.1 cysteine desulfurase family protein -
  QRY57_RS21690 (QRY57_21695) - 3882382..3882798 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87512.21 Da        Isoelectric Point: 5.0946

>NTDB_id=843796 QRY57_RS21670 WP_286016062.1 3876859..3879195(-) (recD2) [Bacillus arachidis strain YX15]
MGNQHAMDLFEEEQKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKRVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKTGMVQYLASDLFKGIGKRTAEKIVDYLGEHAISKIMDDPAALEGVVNKQKAQEIYDTIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGMSGNHNDRVRAGCFYTLENVS
LQDGHVFMEKGQLVRETMSLLNKQESAVAEEDVVQCVEMMQGEGKVIIEDERIYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLLTLGKIEEQLKVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPKDYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIIVGD
EDQLPSVGPGQVLKDLLDAGAIPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNKKDRSFIGCSGTQIVEVVKQVC
ENAKAKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSREIAYGDVVYRVGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEKQDMIVISFDGIEVTYIKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTAITRSKKF
LIICGEESAFQSGVNRLDDSMRQTTLADRLQESKEEVQMVTIDGQEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=843796 QRY57_RS21670 WP_286016062.1 3876859..3879195(-) (recD2) [Bacillus arachidis strain YX15]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGCAAAAATTTATAAAAGCACAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACAAATGAAACATATGACGAAAAAAGAGTGATGA
TCAACGGTCACTTTCCCCGTATGCATGAAGACGAAGTATTTACATTAACAGGGCATTTTAAAGACCATCCAAAGTACGGA
AAGCAATATTTAGTTGAAACATTTAAAAAAGAGTTACCCCAAACCAAAACAGGTATGGTGCAATATTTAGCAAGTGATTT
ATTTAAAGGAATTGGGAAGAGAACAGCAGAAAAGATTGTTGATTATCTTGGGGAACATGCAATTTCTAAAATTATGGACG
ACCCTGCTGCATTAGAAGGTGTTGTAAATAAGCAGAAAGCACAAGAGATTTATGACACAATTATTGAACACCAGGGTCTT
GAAAAAGTCATGAGCTTTTTAAATGGTTATGGTTTTGGAACGAAGCTCTCGATTAAGATTTATCAGCAGTATAAAGAAAT
GACGCTTGAGGTAATTCGGAACAATCCGTATCAACTGATTGAGGAAGTAGATGGTATAGGATTCGGAAGAGCGGATGATA
TAGGACGAGCGCTTGGTATGTCAGGGAATCATAATGACCGTGTACGTGCCGGATGTTTCTATACACTAGAGAATGTTTCA
CTGCAAGATGGGCATGTATTTATGGAAAAAGGTCAACTTGTTCGAGAAACAATGTCACTTTTAAATAAGCAAGAAAGCGC
TGTGGCAGAAGAAGATGTAGTGCAGTGTGTTGAAATGATGCAAGGAGAAGGGAAAGTCATTATCGAAGACGAGCGTATTT
ATTTGGCATCTCTGTTTTATTCTGAAAAGGGCGTTGTCAAATCAATTCGCCGTCTCATGAATCAAGAAGAGACACCTTCG
TTTCCTGAAGCAGAAGTACTATTAACGTTAGGGAAAATTGAAGAGCAGCTAAAAGTACAGTATGCGCCGTTTCAACAAGA
GGCCATCCAAACTGCTCTTCATAAGCCGATGATGCTATTAACAGGTGGACCGGGCACAGGGAAGACAACTGTAATTAAAG
GAATCGTCGAAATGTACGCTTCCTTGCATGGTTTATCATTAAATCCGAAAGATTATAGTGATGATAATCCGTTTCCGATT
TTGTTAACAGCTCCGACAGGCCGCGCTGCGAAGCGAATGAGTGAGTCGACAGGACTTCCTGCTTGTACAATTCATCGTTT
ACTTGGATGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCGGTGCAAGGGAAGTTACTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAACTATTTAAATCATTACCAACAAATATTCAAGTCATTATTGTAGGTGAT
GAAGATCAATTGCCATCTGTAGGGCCAGGGCAAGTATTGAAGGATTTATTAGATGCTGGGGCGATTCCGACAGTGAAGTT
AACAGAGATTTACCGTCAAGCAGAAGGGTCATCCGTTATTCAGCTTGCCCATGCAATAAAAAATGGAACGCTTCCACCAG
ACTTAGCACAAAATAAAAAAGATCGTTCGTTTATTGGTTGCTCAGGTACTCAAATTGTTGAGGTTGTAAAGCAAGTATGT
GAAAACGCAAAAGCGAAAGGATTTAGTGCAAGAGATGTACAAGTATTAGCACCTATGTACCGCGGGCCGGCAGGGATTAA
TGTGTTAAATGAAGCGCTGCAAGAGGTCTTTAATCCAAAAAAAGAAAAGAGTAGAGAAATTGCTTATGGTGATGTTGTGT
ACCGTGTCGGTGATAAAGTGCTGCAGCTCGTAAATCAACCAGAAAGTCAGGTGTTTAATGGTGATATTGGAGAGATTGTT
TCTGTCTTTTATGCAAAGGAGAATGTCGAGAAACAAGATATGATTGTTATTTCATTTGACGGGATTGAAGTAACATATAT
AAAGCCAGATTTAAATCAGATTACGCATGCATATTGTTGTTCAATCCATAAGTCACAGGGAAGTGAATTCCCAATTGTAA
TTATGCCGATTGTAAAGAGCTATTACCGCATGCTGCGTCGTAATTTAATTTATACAGCTATTACGAGAAGTAAAAAGTTT
TTAATTATTTGCGGAGAAGAATCAGCCTTTCAATCAGGTGTGAATCGTCTTGATGATTCAATGCGGCAAACAACATTAGC
GGATCGCTTGCAGGAATCAAAAGAGGAAGTACAAATGGTTACAATTGATGGTCAGGAGATGGATGTGGAAAACATTTCAC
CGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-547)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58