Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMG71_RS23270 Genome accession   NZ_AP027176
Coordinates   4463910..4464377 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain EH2252     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4458910..4469377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG71_RS23225 (EH2252_4457) rplP 4459020..4459430 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QMG71_RS23230 (EH2252_4458) rpsC 4459443..4460144 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QMG71_RS23235 (EH2252_4459) rplV 4460162..4460494 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QMG71_RS23240 (EH2252_4460) rpsS 4460509..4460787 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QMG71_RS23245 (EH2252_4461) rplB 4460804..4461625 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QMG71_RS23250 (EH2252_4462) rplW 4461643..4461945 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QMG71_RS23255 (EH2252_4463) rplD 4461942..4462547 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QMG71_RS23260 (EH2252_4464) rplC 4462558..4463187 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QMG71_RS23265 (EH2252_4465) rpsJ 4463220..4463531 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QMG71_RS23270 (EH2252_4466) pilD 4463910..4464377 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  QMG71_RS23275 (EH2252_4467) bfr 4464374..4464850 (-) 477 WP_000675515.1 bacterioferritin -
  QMG71_RS23280 (EH2252_4468) bfd 4464923..4465117 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QMG71_RS23285 (EH2252_4469) tuf 4465300..4466484 (-) 1185 WP_000031783.1 elongation factor Tu -
  QMG71_RS23290 (EH2252_4470) fusA 4466555..4468669 (-) 2115 WP_000124700.1 elongation factor G -
  QMG71_RS23295 (EH2252_4471) rpsG 4468766..4469236 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=84375 QMG71_RS23270 WP_000339836.1 4463910..4464377(+) (pilD) [Escherichia coli strain EH2252]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=84375 QMG71_RS23270 WP_000339836.1 4463910..4464377(+) (pilD) [Escherichia coli strain EH2252]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment