Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QRA08_RS27325 Genome accession   NZ_CP127331
Coordinates   5354403..5355182 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain BC116     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 5346499..5378002 5354403..5355182 within 0


Gene organization within MGE regions


Location: 5346499..5378002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS27285 (QRA08_27220) rseP 5346901..5348157 (-) 1257 WP_001090233.1 RIP metalloprotease RseP -
  QRA08_RS27290 (QRA08_27225) dxr 5348175..5349317 (-) 1143 WP_406653284.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QRA08_RS27295 (QRA08_27230) cdsA 5349341..5350132 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  QRA08_RS27300 (QRA08_27235) uppS 5350150..5350926 (-) 777 WP_000971296.1 isoprenyl transferase -
  QRA08_RS27305 (QRA08_27240) frr 5351012..5351569 (-) 558 WP_000531505.1 ribosome recycling factor -
  QRA08_RS27310 (QRA08_27245) pyrH 5351572..5352294 (-) 723 WP_000042669.1 UMP kinase -
  QRA08_RS27315 (QRA08_27250) tsf 5352361..5353248 (-) 888 WP_001018577.1 translation elongation factor Ts -
  QRA08_RS27320 (QRA08_27255) rpsB 5353352..5354053 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  QRA08_RS27325 (QRA08_27260) codY 5354403..5355182 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QRA08_RS27330 (QRA08_27265) hslU 5355260..5356651 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  QRA08_RS27335 (QRA08_27270) hslV 5356674..5357216 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  QRA08_RS27340 (QRA08_27275) xerC 5357259..5358158 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  QRA08_RS27345 (QRA08_27280) trmFO 5358224..5359528 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QRA08_RS27350 (QRA08_27285) topA 5359577..5361655 (-) 2079 WP_001286955.1 type I DNA topoisomerase -
  QRA08_RS27355 (QRA08_27290) dprA 5361800..5362669 (-) 870 WP_000818046.1 DNA-processing protein DprA -
  QRA08_RS27360 (QRA08_27295) sucD 5362757..5363659 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  QRA08_RS27365 (QRA08_27300) sucC 5363679..5364839 (-) 1161 WP_001020790.1 ADP-forming succinate--CoA ligase subunit beta -
  QRA08_RS27370 (QRA08_27305) - 5365033..5365806 (-) 774 WP_001194269.1 ribonuclease HII -
  QRA08_RS27375 (QRA08_27310) ylqF 5365863..5366753 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  QRA08_RS27380 (QRA08_27315) lepB 5366774..5367325 (-) 552 WP_000711852.1 signal peptidase I -
  QRA08_RS27385 (QRA08_27320) rplS 5367427..5367771 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  QRA08_RS27390 (QRA08_27325) trmD 5367918..5368652 (-) 735 WP_000686899.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QRA08_RS27395 (QRA08_27330) rimM 5368652..5369167 (-) 516 WP_000170272.1 ribosome maturation factor RimM -
  QRA08_RS27400 (QRA08_27335) - 5369288..5369515 (-) 228 WP_000737399.1 KH domain-containing protein -
  QRA08_RS27405 (QRA08_27340) rpsP 5369530..5369802 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  QRA08_RS27410 (QRA08_27345) ffh 5369904..5371253 (-) 1350 WP_000863460.1 signal recognition particle protein -
  QRA08_RS27415 (QRA08_27350) - 5371266..5371598 (-) 333 WP_000891062.1 putative DNA-binding protein -
  QRA08_RS27420 (QRA08_27355) ftsY 5371731..5372720 (-) 990 WP_000007642.1 signal recognition particle-docking protein FtsY -
  QRA08_RS27425 (QRA08_27360) smc 5372736..5376305 (-) 3570 WP_075717457.1 chromosome segregation protein SMC -
  QRA08_RS27430 (QRA08_27365) rncS 5376453..5377190 (-) 738 WP_001146875.1 ribonuclease III -
  QRA08_RS27435 (QRA08_27370) acpP 5377249..5377482 (-) 234 WP_000786062.1 acyl carrier protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=843502 QRA08_RS27325 WP_000421290.1 5354403..5355182(-) (codY) [Bacillus cereus strain BC116]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=843502 QRA08_RS27325 WP_000421290.1 5354403..5355182(-) (codY) [Bacillus cereus strain BC116]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459