Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMG87_RS22655 Genome accession   NZ_AP027170
Coordinates   4363539..4364006 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 20.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4358539..4369006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG87_RS22610 (B201_4339) rplP 4358649..4359059 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QMG87_RS22615 (B201_4340) rpsC 4359072..4359773 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QMG87_RS22620 (B201_4341) rplV 4359791..4360123 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QMG87_RS22625 (B201_4342) rpsS 4360138..4360416 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QMG87_RS22630 (B201_4343) rplB 4360433..4361254 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QMG87_RS22635 (B201_4344) rplW 4361272..4361574 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QMG87_RS22640 (B201_4345) rplD 4361571..4362176 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QMG87_RS22645 (B201_4346) rplC 4362187..4362816 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QMG87_RS22650 (B201_4347) rpsJ 4362849..4363160 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QMG87_RS22655 (B201_4348) pilD 4363539..4364006 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  QMG87_RS22660 (B201_4349) bfr 4364003..4364479 (-) 477 WP_000675515.1 bacterioferritin -
  QMG87_RS22665 (B201_4350) bfd 4364552..4364746 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QMG87_RS22670 (B201_4351) tuf 4364929..4366113 (-) 1185 WP_000031783.1 elongation factor Tu -
  QMG87_RS22675 (B201_4352) fusA 4366184..4368298 (-) 2115 WP_000124700.1 elongation factor G -
  QMG87_RS22680 (B201_4353) rpsG 4368395..4368865 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=84295 QMG87_RS22655 WP_000339836.1 4363539..4364006(+) (pilD) [Escherichia coli strain 20.1]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=84295 QMG87_RS22655 WP_000339836.1 4363539..4364006(+) (pilD) [Escherichia coli strain 20.1]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment