Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VYI51_RS14020 Genome accession   NZ_CP142919
Coordinates   2816898..2817365 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain B19429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811898..2822365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI51_RS13975 (VYI51_13980) rplP 2812008..2812418 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  VYI51_RS13980 (VYI51_13985) rpsC 2812431..2813132 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  VYI51_RS13985 (VYI51_13990) rplV 2813150..2813482 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  VYI51_RS13990 (VYI51_13995) rpsS 2813497..2813775 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  VYI51_RS13995 (VYI51_14000) rplB 2813792..2814613 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  VYI51_RS14000 (VYI51_14005) rplW 2814631..2814933 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  VYI51_RS14005 (VYI51_14010) rplD 2814930..2815535 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  VYI51_RS14010 (VYI51_14015) rplC 2815546..2816175 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  VYI51_RS14015 (VYI51_14020) rpsJ 2816208..2816519 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  VYI51_RS14020 (VYI51_14025) pilD 2816898..2817365 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  VYI51_RS14025 (VYI51_14030) bfr 2817362..2817838 (-) 477 WP_000675515.1 bacterioferritin -
  VYI51_RS14030 (VYI51_14035) bfd 2817911..2818105 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  VYI51_RS14035 (VYI51_14040) tuf 2818288..2819472 (-) 1185 WP_000031783.1 elongation factor Tu -
  VYI51_RS14040 (VYI51_14045) fusA 2819543..2821657 (-) 2115 WP_000124703.1 elongation factor G -
  VYI51_RS14045 (VYI51_14050) rpsG 2821754..2822224 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=842559 VYI51_RS14020 WP_000340159.1 2816898..2817365(+) (pilD) [Escherichia coli strain B19429]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=842559 VYI51_RS14020 WP_000340159.1 2816898..2817365(+) (pilD) [Escherichia coli strain B19429]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368