Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VYI56_RS01415 Genome accession   NZ_CP142915
Coordinates   301082..301846 (-) Length   254 a.a.
NCBI ID   WP_032202357.1    Uniprot ID   -
Organism   Escherichia coli strain B19374     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 296082..306846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI56_RS01405 (VYI56_01405) nikR 299872..300273 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  VYI56_RS01410 (VYI56_01410) nikE 300279..301085 (-) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  VYI56_RS01415 (VYI56_01415) amiE 301082..301846 (-) 765 WP_032202357.1 nickel import ATP-binding protein NikD Regulator
  VYI56_RS01420 (VYI56_01420) nikC 301846..302679 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  VYI56_RS01425 (VYI56_01425) nikB 302676..303620 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  VYI56_RS01430 (VYI56_01430) nikA 303620..305194 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  VYI56_RS01435 (VYI56_01435) acpT 305305..305892 (-) 588 WP_000285791.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26850.40 Da        Isoelectric Point: 6.3761

>NTDB_id=842437 VYI56_RS01415 WP_032202357.1 301082..301846(-) (amiE) [Escherichia coli strain B19374]
MPQQIELRNIALQTAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=842437 VYI56_RS01415 WP_032202357.1 301082..301846(-) (amiE) [Escherichia coli strain B19374]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGACCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42.979

92.52

0.398
  amiE Streptococcus thermophilus LMD-9

42.979

92.52

0.398
  amiE Streptococcus salivarius strain HSISS4

41.702

92.52

0.386