Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QO263_RS04465 Genome accession   NZ_CP127161
Coordinates   914837..916684 (+) Length   615 a.a.
NCBI ID   WP_285626868.1    Uniprot ID   -
Organism   Proteiniborus sp. MB09-C3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 909837..921684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO263_RS04450 (QO263_04450) - 910477..911862 (+) 1386 WP_285626860.1 polysaccharide biosynthesis C-terminal domain-containing protein -
  QO263_RS04455 (QO263_04455) - 912077..912541 (+) 465 WP_285626862.1 MarR family transcriptional regulator -
  QO263_RS04460 (QO263_04460) - 912588..914840 (+) 2253 WP_285626864.1 ABC transporter transmembrane domain-containing protein -
  QO263_RS04465 (QO263_04465) rcrQ 914837..916684 (+) 1848 WP_285626868.1 ABC transporter ATP-binding protein Regulator
  QO263_RS04470 (QO263_04470) - 916742..917920 (-) 1179 WP_285626871.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  QO263_RS04475 (QO263_04475) - 917910..918785 (-) 876 WP_285626873.1 ABC transporter permease subunit -
  QO263_RS04480 (QO263_04480) - 918798..919778 (-) 981 WP_285626875.1 ABC transporter substrate-binding protein -
  QO263_RS04485 (QO263_04485) - 920161..921273 (+) 1113 WP_285626878.1 ATP-NAD kinase family protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 68989.88 Da        Isoelectric Point: 6.9944

>NTDB_id=842171 QO263_RS04465 WP_285626868.1 914837..916684(+) (rcrQ) [Proteiniborus sp. MB09-C3]
MSENNMKNQQPRRMGPPGPMGRGFEKPKDFKGTFSKLLRYLRPYRLKLIIVMLFAIGSTVFTIRAPKILGKATTKIFEGL
VSKISGASDGGIDFQYILNIILILIGLYVISAIFSFIQGIIVTGVSQKVSYNLRREISEKTNRLPLKYFDSVSHGDVLSR
VTNDVDTVSQTLNQSMSQIITSATTLVGVLIMMLSISWQMTIAAILILPISMVLVMGIVKRSQKYFKTQQESLGRVNGHI
EEVYSGHNIMKAFNAEKEAVEKFRKINGELYNSAWKAQFLSGMMMPIMMFIGNIGYVAVSILGGWYAIKKTIEVGDILSF
IQYIRSFTQPIAQVAQISNVLQSTVAAAERVFEFLDEDEEPKESETPVKLEEVEGRVTFENVKFGYNEDKIIINDFSADI
KPGQKVAIVGPTGAGKTTIVKLLMRFYDLNEGRIFVDGHDINDFTREDLRDNFGMVLQDTWLFSGTIMENIRYGRLDATD
EEVIEAAKSAHAHRFIHTLPDGYNMIINEEANNISQGQKQLLTIARAILSNPKILILDEATSSVDTRTEILIQRAMENLM
KGRTAFIIAHRLSTIRDADLILVMKDGDIVEQGSHEELLSKNGFYAELYNSQFAA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=842171 QO263_RS04465 WP_285626868.1 914837..916684(+) (rcrQ) [Proteiniborus sp. MB09-C3]
ATGAGCGAAAACAATATGAAAAATCAACAACCAAGGAGAATGGGCCCTCCTGGTCCTATGGGAAGAGGATTTGAAAAGCC
TAAGGATTTTAAAGGAACTTTTTCTAAATTACTTAGATACCTAAGACCTTATAGACTAAAACTAATTATAGTAATGCTAT
TTGCTATAGGAAGTACAGTCTTTACCATAAGAGCACCTAAAATACTTGGTAAAGCAACAACTAAAATATTTGAAGGATTA
GTGTCTAAAATATCAGGGGCTTCAGATGGGGGAATTGATTTTCAGTATATATTAAATATAATCTTAATCCTAATAGGACT
ATATGTAATCTCAGCAATATTTTCCTTTATACAAGGAATTATAGTTACAGGTGTTTCACAGAAGGTATCCTATAACCTGA
GAAGGGAAATATCTGAAAAGACAAATAGGCTTCCACTCAAGTATTTTGATTCTGTGTCTCACGGAGATGTGTTATCAAGG
GTCACAAATGACGTAGATACTGTTAGTCAGACATTAAATCAAAGTATGAGTCAGATAATTACCTCTGCTACTACACTTGT
AGGTGTTCTCATAATGATGCTTTCCATAAGCTGGCAGATGACTATTGCTGCTATTTTGATACTGCCAATCTCTATGGTTT
TAGTCATGGGCATAGTCAAGCGATCTCAGAAATACTTTAAGACACAGCAAGAATCTCTTGGTCGCGTTAACGGACATATA
GAAGAGGTTTATAGCGGACACAATATAATGAAAGCCTTTAATGCAGAAAAGGAAGCTGTAGAGAAATTTAGAAAGATTAA
CGGTGAGCTTTATAACTCTGCCTGGAAGGCACAGTTTCTTTCTGGAATGATGATGCCTATCATGATGTTTATTGGCAATA
TAGGATATGTAGCAGTTTCAATTTTAGGCGGATGGTATGCTATAAAAAAGACTATAGAGGTAGGAGATATACTTTCCTTT
ATACAATATATAAGGAGCTTTACTCAGCCAATAGCACAGGTAGCTCAGATAAGCAATGTACTCCAATCGACAGTTGCTGC
TGCTGAAAGAGTATTTGAATTCTTAGATGAGGATGAAGAGCCTAAGGAGTCTGAAACACCTGTTAAATTAGAAGAAGTAG
AAGGAAGAGTCACCTTTGAGAATGTCAAATTCGGGTACAATGAAGACAAGATAATAATAAATGACTTTTCAGCAGACATA
AAGCCAGGGCAGAAGGTTGCCATAGTAGGGCCTACAGGAGCAGGAAAAACTACTATAGTTAAGCTTTTAATGAGATTTTA
TGACTTAAATGAGGGTAGAATTTTCGTAGATGGTCATGATATCAATGATTTTACAAGAGAAGACTTAAGGGATAATTTTG
GAATGGTTCTTCAAGACACATGGCTTTTTTCTGGAACTATAATGGAGAACATAAGATATGGGAGACTAGATGCTACAGAT
GAAGAAGTAATAGAAGCTGCAAAATCTGCCCATGCCCATAGATTTATTCATACTTTACCAGATGGATACAATATGATTAT
AAATGAGGAGGCAAACAATATATCTCAAGGACAGAAGCAGCTCCTAACCATAGCTAGAGCAATTCTTTCAAATCCTAAGA
TTCTTATACTAGACGAGGCAACATCCTCTGTAGATACTAGAACAGAAATATTGATACAAAGGGCCATGGAAAATCTAATG
AAGGGAAGAACAGCCTTTATAATTGCACATAGACTTTCAACCATAAGAGATGCAGATTTGATCCTAGTTATGAAGGATGG
AGATATAGTAGAGCAAGGCAGCCATGAAGAGCTTCTATCAAAAAATGGATTCTACGCAGAGCTTTATAACAGCCAATTTG
CAGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.973

94.797

0.493