Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U9988_RS24870 Genome accession   NZ_CP142723
Coordinates   5268333..5268758 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5263333..5273758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS24855 pilX 5263897..5264484 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  U9988_RS24860 pilY1 5264496..5267987 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  U9988_RS24865 pilY2 5267989..5268336 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  U9988_RS24870 comF 5268333..5268758 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  U9988_RS24875 ispH 5268805..5269749 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U9988_RS24880 fkpB 5269835..5270275 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  U9988_RS24885 lspA 5270268..5270777 (-) 510 WP_003102615.1 signal peptidase II -
  U9988_RS24890 ileS 5270770..5273601 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=841931 U9988_RS24870 WP_003094721.1 5268333..5268758(+) (comF) [Pseudomonas aeruginosa strain LXZ1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=841931 U9988_RS24870 WP_003094721.1 5268333..5268758(+) (comF) [Pseudomonas aeruginosa strain LXZ1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383