Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QMC72_RS15850 Genome accession   NZ_CP127095
Coordinates   3183928..3184707 (-) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain LBA001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178928..3189707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS15820 (QMC72_15820) fliH 3178943..3179695 (-) 753 WP_060398627.1 flagellar assembly protein FliH -
  QMC72_RS15825 (QMC72_15825) fliG 3179688..3180704 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QMC72_RS15830 (QMC72_15830) fliF 3180717..3182327 (-) 1611 WP_133487475.1 flagellar basal-body MS-ring/collar protein FliF -
  QMC72_RS15835 (QMC72_15835) fliE 3182373..3182693 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QMC72_RS15840 (QMC72_15840) flgC 3182705..3183157 (-) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  QMC72_RS15845 (QMC72_15845) flgB 3183157..3183546 (-) 390 WP_060398625.1 flagellar basal body rod protein FlgB -
  QMC72_RS15850 (QMC72_15850) codY 3183928..3184707 (-) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QMC72_RS15855 (QMC72_15855) hslU 3184747..3186159 (-) 1413 WP_284106753.1 HslU--HslV peptidase ATPase subunit -
  QMC72_RS15860 (QMC72_15860) clpQ 3186167..3186712 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QMC72_RS15865 (QMC72_15865) xerC 3186725..3187639 (-) 915 WP_003238557.1 tyrosine recombinase XerC -
  QMC72_RS15870 (QMC72_15870) trmFO 3187707..3189014 (-) 1308 WP_133487477.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=841698 QMC72_RS15850 WP_003238551.1 3183928..3184707(-) (codY) [Bacillus inaquosorum strain LBA001]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=841698 QMC72_RS15850 WP_003238551.1 3183928..3184707(-) (codY) [Bacillus inaquosorum strain LBA001]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATTGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467