Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QMC72_RS01775 Genome accession   NZ_CP127095
Coordinates   343020..345380 (+) Length   786 a.a.
NCBI ID   WP_133486676.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338020..350380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS01755 (QMC72_01755) comN 339353..339649 (+) 297 WP_003222684.1 post-transcriptional regulator ComN -
  QMC72_RS01760 (QMC72_01760) secDF 339688..341901 (+) 2214 WP_133486674.1 protein translocase subunit SecDF -
  QMC72_RS01765 (QMC72_01765) - 342056..342553 (+) 498 WP_003237514.1 cation:proton antiporter regulatory subunit -
  QMC72_RS01770 (QMC72_01770) - 342630..342953 (+) 324 WP_003237512.1 lipopolysaccharide assembly LapA domain-containing protein -
  QMC72_RS01775 (QMC72_01775) recJ 343020..345380 (+) 2361 WP_133486676.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QMC72_RS01780 (QMC72_01780) - 345386..345898 (+) 513 WP_003237508.1 adenine phosphoribosyltransferase -
  QMC72_RS01785 (QMC72_01785) relA 346068..348272 (+) 2205 WP_284106966.1 GTP diphosphokinase -
  QMC72_RS01790 (QMC72_01790) dtd 348285..348725 (+) 441 WP_100275609.1 D-aminoacyl-tRNA deacylase -
  QMC72_RS01795 (QMC72_01795) - 348752..350305 (-) 1554 WP_133486680.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88211.79 Da        Isoelectric Point: 5.0087

>NTDB_id=841651 QMC72_RS01775 WP_133486676.1 343020..345380(+) (recJ) [Bacillus inaquosorum strain LBA001]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTTRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIANNTLTEEDFIPVQEVDLVCDVEDITVESITEMNQLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSIDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=841651 QMC72_RS01775 WP_133486676.1 343020..345380(+) (recJ) [Bacillus inaquosorum strain LBA001]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGACCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGTATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTCCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCAAAGGTGGCAAAGGAACTT
GGGCTGGATGTCATTATAACCGATCACCATGAGCCGGGACCGGAGCTCCCGGATGTTCACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAATTGGCCGGGGTCGGAGTCGCGTTTAAGCTTGCTCACGCTTTATTGGGCGAAC
TTCCAGATGAACTGCTTGACTTGGCGGCAATCGGTACTATTGCCGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCGGACGACTCGGCTGGGTTTAAAAGAGCTGATCAAGCTGTCAGGCGGGGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGTTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCTGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATCCGTTTGAAGCGGAAGAGCTTGCCGCCGAAATTGATCAGCTGAACAAAGAA
CGCCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCAATCAAACTGCAATCGT
CGTGGCCAAAGCCGGGTGGAATCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTAGTGGACCGTTTCTACAGACCGGCCA
TTGTGCTCGGCATTGATGAAGAAAAAGGGATTGCTAAAGGATCGGCCCGAAGCATCAGGGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTCCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGTAACAGGCTGAATGAAATAGCGAACAACACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTCG
ATCTTGTCTGCGATGTCGAGGACATTACAGTTGAAAGCATCACAGAGATGAACCAGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGGGCTAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCCCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCCGGGTT
CAAGAATTTCAATTGTCGGTGAGATGTCAATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGCGAAGTGCACGTCATTA
GCTCTATAGATCAAGCGAAGGCGTTTGACCTCGATGGTGCATATATTGTATTACTTGATCCGCCGCCTTCGTTGGACATG
CTTGCACGTTTGCTGGAAGGCAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCAAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTAAAAAAACACGGTT
CAGAGCTTGCAAGACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
ACAGCAGCTAATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.328

100

0.973