Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VR553_RS01365 Genome accession   NZ_CP142680
Coordinates   302733..303497 (-) Length   254 a.a.
NCBI ID   WP_077492360.1    Uniprot ID   -
Organism   Escherichia coli strain FG31-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 297733..308497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR553_RS01355 (VR553_01340) nikR 301523..301924 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  VR553_RS01360 (VR553_01345) nikE 301930..302736 (-) 807 WP_000173665.1 nickel import ATP-binding protein NikE -
  VR553_RS01365 (VR553_01350) amiE 302733..303497 (-) 765 WP_077492360.1 nickel import ATP-binding protein NikD Regulator
  VR553_RS01370 (VR553_01355) nikC 303497..304330 (-) 834 WP_077492362.1 nickel ABC transporter permease subunit NikC -
  VR553_RS01375 (VR553_01360) nikB 304327..305271 (-) 945 WP_000947062.1 nickel ABC transporter permease subunit NikB -
  VR553_RS01380 (VR553_01365) nikA 305271..306845 (-) 1575 WP_000953348.1 nickel ABC transporter substrate-binding protein -
  VR553_RS01385 (VR553_01370) acpT 306956..307543 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26880.52 Da        Isoelectric Point: 6.5997

>NTDB_id=841624 VR553_RS01365 WP_077492360.1 302733..303497(-) (amiE) [Escherichia coli strain FG31-1]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VFAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=841624 VR553_RS01365 WP_077492360.1 302733..303497(-) (amiE) [Escherichia coli strain FG31-1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTTCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.532

97.638

0.406
  amiE Streptococcus thermophilus LMD-9

41.532

97.638

0.406
  amiE Streptococcus salivarius strain HSISS4

40.323

97.638

0.394