Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLC_RS09955 Genome accession   NZ_AP024222
Coordinates   1957116..1958054 (+) Length   312 a.a.
NCBI ID   WP_021165031.1    Uniprot ID   A0AAD1NII7
Organism   Lactococcus cremoris strain EPSC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952116..1963054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC_RS09935 (LLC_20530) - 1952285..1952743 (+) 459 WP_021165027.1 hypothetical protein -
  LLC_RS09940 (LLC_20550) - 1952804..1953694 (-) 891 Protein_1967 IS982-like element ISLll1 family transposase -
  LLC_RS14590 - 1954195..1954668 (+) 474 WP_032951197.1 hypothetical protein -
  LLC_RS09945 (LLC_20560) typA 1954845..1956677 (+) 1833 WP_031286284.1 translational GTPase TypA -
  LLC_RS09950 (LLC_20570) - 1956777..1957028 (+) 252 WP_011677086.1 DUF3165 family protein -
  LLC_RS09955 (LLC_20580) comYH 1957116..1958054 (+) 939 WP_021165031.1 class I SAM-dependent methyltransferase Machinery gene
  LLC_RS09960 (LLC_20590) - 1958246..1959433 (+) 1188 WP_011677084.1 acetate kinase -
  LLC_RS09965 (LLC_20600) - 1959592..1960779 (+) 1188 WP_061778206.1 acetate kinase -
  LLC_RS09970 (LLC_20610) - 1960909..1961361 (+) 453 WP_061778205.1 hypothetical protein -
  LLC_RS09975 (LLC_20620) pyrH 1961446..1962162 (+) 717 WP_004254608.1 UMP kinase -
  LLC_RS09980 (LLC_20630) frr 1962318..1962875 (+) 558 WP_011677081.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34710.68 Da        Isoelectric Point: 4.3603

>NTDB_id=84149 LLC_RS09955 WP_021165031.1 1957116..1958054(+) (comYH) [Lactococcus cremoris strain EPSC]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVSKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=84149 LLC_RS09955 WP_021165031.1 1957116..1958054(+) (comYH) [Lactococcus cremoris strain EPSC]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTTCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment