Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VMR32_RS02475 Genome accession   NZ_CP142601
Coordinates   542396..543139 (-) Length   247 a.a.
NCBI ID   WP_327213023.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Tongji     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537396..548139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VMR32_RS02450 (VMR32_02450) - 537868..538383 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  VMR32_RS02455 (VMR32_02455) rarD 539073..539969 (-) 897 WP_003103301.1 EamA family transporter RarD -
  VMR32_RS02460 (VMR32_02460) - 540172..541146 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  VMR32_RS02465 (VMR32_02465) - 541208..541966 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  VMR32_RS02470 (VMR32_02470) - 542034..542354 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  VMR32_RS02475 (VMR32_02475) comF 542396..543139 (-) 744 WP_327213023.1 ComF family protein Machinery gene
  VMR32_RS02480 (VMR32_02480) - 543278..543571 (-) 294 WP_003084806.1 hypothetical protein -
  VMR32_RS02485 (VMR32_02485) - 543625..544551 (-) 927 WP_209237529.1 LysR family transcriptional regulator -
  VMR32_RS02490 (VMR32_02490) - 544669..545427 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  VMR32_RS02495 (VMR32_02495) - 545504..545752 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  VMR32_RS02500 (VMR32_02500) - 545763..547139 (+) 1377 WP_209237527.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  VMR32_RS02505 (VMR32_02505) - 547141..548019 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27703.47 Da        Isoelectric Point: 11.3830

>NTDB_id=841447 VMR32_RS02475 WP_327213023.1 542396..543139(-) (comF) [Pseudomonas aeruginosa strain Tongji]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLPLPLPLDGQVCGECLRRPPAYEQA
IAPWRYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGEL
VLRCDPHSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCL
ARTPKPG

Nucleotide


Download         Length: 744 bp        

>NTDB_id=841447 VMR32_RS02475 WP_327213023.1 542396..543139(-) (comF) [Pseudomonas aeruginosa strain Tongji]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCCCTGCCCCTGCCCCTGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCG
ATCGCGCCCTGGCGCTACGCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCG
GCTGCTCGGCGAGTTGCTGGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGG
TCCCGCTGGCGCCTCGGCGCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTG
GTCCTGCGCTGCGATCCGCACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCG
GCGCAACCTGCGCCACGCCTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGC
TCACCACCGGGGCCACCGCCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTG
GCGCGCACGCCGAAGCCCGGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-244)

Double zinc ribbon domain (DZR_2)

(9-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.652

100

0.377