Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VOS73_RS02345 Genome accession   NZ_CP142398
Coordinates   504171..504638 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain SX4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 499171..509638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOS73_RS02320 (VOS73_02315) rpsG 499312..499782 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  VOS73_RS02325 (VOS73_02320) fusA 499879..501993 (+) 2115 WP_000124700.1 elongation factor G -
  VOS73_RS02330 (VOS73_02325) tuf 502064..503248 (+) 1185 WP_000031783.1 elongation factor Tu -
  VOS73_RS02335 (VOS73_02330) bfd 503431..503625 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  VOS73_RS02340 (VOS73_02335) bfr 503698..504174 (+) 477 WP_000675515.1 bacterioferritin -
  VOS73_RS02345 (VOS73_02340) pilD 504171..504638 (-) 468 WP_000340159.1 prepilin peptidase Machinery gene
  VOS73_RS02350 (VOS73_02345) rpsJ 505017..505328 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  VOS73_RS02355 (VOS73_02350) rplC 505361..505990 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  VOS73_RS02360 (VOS73_02355) rplD 506001..506606 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  VOS73_RS02365 (VOS73_02360) rplW 506603..506905 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  VOS73_RS02370 (VOS73_02365) rplB 506923..507744 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  VOS73_RS02375 (VOS73_02370) rpsS 507761..508039 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  VOS73_RS02380 (VOS73_02375) rplV 508054..508386 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  VOS73_RS02385 (VOS73_02380) rpsC 508404..509105 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  VOS73_RS02390 (VOS73_02385) rplP 509118..509528 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=841109 VOS73_RS02345 WP_000340159.1 504171..504638(-) (pilD) [Escherichia coli strain SX4]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=841109 VOS73_RS02345 WP_000340159.1 504171..504638(-) (pilD) [Escherichia coli strain SX4]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368