Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U5897_RS05490 Genome accession   NZ_CP142393
Coordinates   1128423..1129688 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1123423..1134688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS05460 (U5897_05460) pncA 1123643..1124287 (-) 645 WP_000783437.1 bifunctional nicotinamidase/pyrazinamidase -
  U5897_RS05465 (U5897_05465) dapA 1124617..1125510 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  U5897_RS05470 (U5897_05470) - 1125526..1126128 (+) 603 WP_001177091.1 hypothetical protein -
  U5897_RS05475 (U5897_05475) purC 1126166..1126885 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  U5897_RS05480 (U5897_05480) - 1127078..1127281 (+) 204 WP_000418559.1 hypothetical protein -
  U5897_RS05485 (U5897_05485) - 1127567..1128407 (+) 841 Protein_1073 formate/nitrite transporter family protein -
  U5897_RS05490 (U5897_05490) rarA 1128423..1129688 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  U5897_RS05495 (U5897_05495) - 1129794..1130963 (-) 1170 WP_002009408.1 PQQ-dependent sugar dehydrogenase -
  U5897_RS05500 (U5897_05500) - 1131076..1131534 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  U5897_RS05505 (U5897_05505) - 1131729..1131887 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  U5897_RS05510 (U5897_05510) - 1132059..1132796 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  U5897_RS05515 (U5897_05515) - 1132982..1133344 (+) 363 WP_000130110.1 HIT family protein -
  U5897_RS05520 (U5897_05520) mutY 1133485..1134519 (+) 1035 WP_001288810.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=841038 U5897_RS05490 WP_001285406.1 1128423..1129688(-) (rarA) [Acinetobacter baumannii strain 38]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=841038 U5897_RS05490 WP_001285406.1 1128423..1129688(-) (rarA) [Acinetobacter baumannii strain 38]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGCCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375