Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QP877_RS01045 Genome accession   NZ_CP126983
Coordinates   244166..244906 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain LyEC02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239166..249906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP877_RS01025 (QP877_01025) aspS 239608..241371 (-) 1764 WP_284184194.1 aspartate--tRNA ligase -
  QP877_RS01030 (QP877_01030) ribD 241802..242794 (-) 993 WP_284184195.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  QP877_RS01035 (QP877_01035) prmC 242819..243700 (+) 882 WP_284184196.1 peptide chain release factor N(5)-glutamine methyltransferase -
  QP877_RS01040 (QP877_01040) - 243697..244182 (+) 486 WP_021662028.1 regulatory protein RecX -
  QP877_RS01045 (QP877_01045) comF 244166..244906 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  QP877_RS01050 (QP877_01050) - 245035..247104 (-) 2070 WP_284184197.1 M13 family metallopeptidase -
  QP877_RS01055 (QP877_01055) - 247123..248025 (-) 903 WP_039417049.1 nucleotidyltransferase -
  QP877_RS01060 (QP877_01060) - 248207..248347 (-) 141 WP_021663364.1 hypothetical protein -
  QP877_RS01065 (QP877_01065) - 248445..249026 (-) 582 WP_004583806.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=841010 QP877_RS01045 WP_005875257.1 244166..244906(+) (comF) [Porphyromonas gingivalis strain LyEC02]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=841010 QP877_RS01045 WP_005875257.1 244166..244906(+) (comF) [Porphyromonas gingivalis strain LyEC02]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1