Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VKP54_RS07865 Genome accession   NZ_CP142356
Coordinates   1590344..1591018 (-) Length   224 a.a.
NCBI ID   WP_326613002.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain CT95-157     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585344..1596018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP54_RS07850 (VKP54_07850) - 1586982..1588370 (-) 1389 WP_002982466.1 sensor histidine kinase -
  VKP54_RS07855 (VKP54_07855) - 1588367..1589020 (-) 654 WP_002991237.1 response regulator transcription factor -
  VKP54_RS07860 (VKP54_07860) - 1589114..1590331 (-) 1218 WP_111711488.1 ABC transporter permease -
  VKP54_RS07865 (VKP54_07865) amiE 1590344..1591018 (-) 675 WP_326613002.1 ABC transporter ATP-binding protein Regulator
  VKP54_RS07870 (VKP54_07870) - 1591005..1592273 (-) 1269 WP_023080281.1 efflux RND transporter periplasmic adaptor subunit -
  VKP54_RS07875 (VKP54_07875) - 1592697..1592981 (-) 285 WP_002982442.1 hypothetical protein -
  VKP54_RS07880 (VKP54_07880) - 1593128..1593424 (-) 297 WP_111711489.1 DUF4298 domain-containing protein -
  VKP54_RS07885 (VKP54_07885) - 1593566..1595491 (-) 1926 WP_111711490.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.71 Da        Isoelectric Point: 6.2664

>NTDB_id=840734 VKP54_RS07865 WP_326613002.1 1590344..1591018(-) (amiE) [Streptococcus pyogenes strain CT95-157]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACKNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=840734 VKP54_RS07865 WP_326613002.1 1590344..1591018(-) (amiE) [Streptococcus pyogenes strain CT95-157]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGAACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTAAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.034

100

0.362