Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VKP55_RS07220 Genome accession   NZ_CP142351
Coordinates   1416935..1417717 (-) Length   260 a.a.
NCBI ID   WP_326674055.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1411935..1422717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS07195 (VKP55_07195) gatB 1412032..1413471 (-) 1440 WP_009880806.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VKP55_RS07200 (VKP55_07200) gatA 1413471..1414937 (-) 1467 WP_030126887.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VKP55_RS07205 (VKP55_07205) gatC 1414937..1415239 (-) 303 WP_012560907.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VKP55_RS07210 (VKP55_07210) - 1415471..1415695 (-) 225 WP_227868963.1 putative PEP-binding protein -
  VKP55_RS07215 (VKP55_07215) - 1416234..1416788 (-) 555 WP_002988559.1 cysteine hydrolase family protein -
  VKP55_RS07220 (VKP55_07220) codY 1416935..1417717 (-) 783 WP_326674055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VKP55_RS07225 (VKP55_07225) - 1417935..1419149 (-) 1215 WP_010922605.1 pyridoxal phosphate-dependent aminotransferase -
  VKP55_RS07230 (VKP55_07230) - 1419380..1419832 (+) 453 WP_002992571.1 universal stress protein -
  VKP55_RS07235 (VKP55_07235) - 1419955..1421343 (-) 1389 WP_002988557.1 Cof-type HAD-IIB family hydrolase -
  VKP55_RS07240 (VKP55_07240) - 1421415..1422380 (+) 966 WP_011054948.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28647.84 Da        Isoelectric Point: 4.6351

>NTDB_id=840247 VKP55_RS07220 WP_326674055.1 1416935..1417717(-) (codY) [Streptococcus pyogenes strain SS1366]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVEKELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=840247 VKP55_RS07220 WP_326674055.1 1416935..1417717(-) (codY) [Streptococcus pyogenes strain SS1366]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACATTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAAAGAATTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAACGAAGGACGATTGACAGCTTCTGTTATTGCCGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAATTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.373

98.077

0.504