Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VKP35_RS08625 Genome accession   NZ_CP142349
Coordinates   1680781..1681455 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain 11RS100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675781..1686455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS08610 (VKP35_08610) - 1677419..1678807 (-) 1389 WP_002982466.1 sensor histidine kinase -
  VKP35_RS08615 (VKP35_08615) - 1678804..1679457 (-) 654 WP_002991237.1 response regulator transcription factor -
  VKP35_RS08620 (VKP35_08620) - 1679551..1680768 (-) 1218 WP_002993552.1 ABC transporter permease -
  VKP35_RS08625 (VKP35_08625) amiE 1680781..1681455 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  VKP35_RS08630 (VKP35_08630) - 1681442..1682710 (-) 1269 WP_023080281.1 efflux RND transporter periplasmic adaptor subunit -
  VKP35_RS08635 (VKP35_08635) - 1683134..1683418 (-) 285 WP_002982442.1 hypothetical protein -
  VKP35_RS08640 (VKP35_08640) - 1683565..1683861 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  VKP35_RS08645 (VKP35_08645) - 1684105..1684341 (+) 237 WP_063632162.1 hypothetical protein -
  VKP35_RS08650 (VKP35_08650) prsA 1684612..1685541 (-) 930 WP_010922719.1 peptidylprolyl isomerase PrsA -
  VKP35_RS08655 (VKP35_08655) - 1686018..1686323 (-) 306 WP_002993568.1 Spi family protease inhibitor -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=840069 VKP35_RS08625 WP_002982458.1 1680781..1681455(-) (amiE) [Streptococcus pyogenes strain 11RS100]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=840069 VKP35_RS08625 WP_002982458.1 1680781..1681455(-) (amiE) [Streptococcus pyogenes strain 11RS100]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTACC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCTTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366