Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   VR625_RS11100 Genome accession   NZ_CP142147
Coordinates   2433453..2435678 (-) Length   741 a.a.
NCBI ID   WP_161030318.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2428453..2440678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS11090 - 2428851..2431289 (+) 2439 WP_345982168.1 heavy metal translocating P-type ATPase -
  VR625_RS11095 - 2431940..2433238 (-) 1299 WP_109165615.1 citrate synthase -
  VR625_RS11100 recD/recD2/recDB 2433453..2435678 (-) 2226 WP_161030318.1 ATP-dependent RecD-like DNA helicase Machinery gene
  VR625_RS11105 - 2435830..2436033 (+) 204 Protein_2195 hypothetical protein -
  VR625_RS11110 - 2436355..2436852 (-) 498 WP_345982169.1 hypothetical protein -
  VR625_RS11115 - 2437088..2437873 (-) 786 WP_345982170.1 NPP1 family protein -
  VR625_RS11120 - 2438055..2439587 (-) 1533 WP_345982171.1 glycoside hydrolase family 76 protein -
  VR625_RS11125 - 2439827..2440093 (-) 267 WP_109165610.1 hypothetical protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79941.54 Da        Isoelectric Point: 6.5925

>NTDB_id=839942 VR625_RS11100 WP_161030318.1 2433453..2435678(-) (recD/recD2/recDB) [Streptomyces sp. DSS69]
MSNMAVIEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHSQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEKEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPITAVYLVPFHRAELSLAGQLRRLLRTGEDRMPAFQDVD
WEKALGWLATRTGASLAPEQEEAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GSPVPAVRLTRIFRQAQQSGVVTNAHRINAGKPPLTEGLSDFFLFVEDETADAGKLAVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGELNGLLQQVITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDLDEQKLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTNSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=839942 VR625_RS11100 WP_161030318.1 2433453..2435678(-) (recD/recD2/recDB) [Streptomyces sp. DSS69]
ATGTCCAACATGGCCGTCATCGAAGGGGTCCTGGAGAGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGGGCCGGGGATCTGCTCACGGTGGTCGGTGCGCTGCTCGGCGCGCAGGTGGGTGAGTCGCTGC
GGATGGAGGGCCGTTGGGGCTCGCACTCGCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACCGTCCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTCGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTCGACATCATCGAAAAGGAGCCGAAGCGGCTCGTCGAGGTCCCCGGGCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCCGCGTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGTATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGATGTCTGGGGCATCGGGTTCCTCACCGCCGACAGGATCGCCCAGGCGGTCGGGATTCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGTCTTCAGTACGCCCTCTCCCAGTCCTCCGACCAGGGGCACTGCTACCTCCCCGAGGAGCGGCTC
ATCGCGGACGGGGTGAAACTCCTACAGGTCGATACCGGCCTGGTCATCGAGTGTCTGGCCGAGCTGGCCGCCGATCCGGA
GGGTGTCGTACGGGAGAAGGTGCCGTCGCCCGAGGGGGGTGAGCCGATCACCGCTGTCTACCTCGTGCCGTTCCACCGGG
CCGAGCTGTCTCTCGCCGGGCAGCTGCGGCGGCTGCTGCGGACCGGGGAGGACCGGATGCCGGCCTTCCAGGACGTGGAC
TGGGAGAAGGCGCTGGGCTGGCTGGCGACGCGTACGGGGGCCTCGCTGGCGCCCGAGCAGGAGGAGGCGGTACGGCTCGC
GCTCAGCCGGAAGGTGGCCGTCCTGACCGGTGGGCCCGGCTGCGGGAAGTCGTTCACCGTGCGGTCCATCGTCGAGTTGG
CGCGGGCCAAGCGGGCGAAGGTGGTGCTGGCCGCGCCCACGGGGCGGGCCGCCAAGCGGCTGGCCGAGCTGACCGGGGCC
GAGGCGTCCACCGTGCACCGCCTGCTCGAACTGAAACCTGGCGGGGACGCGGCGTACGACCGTGACCGTCCGCTGGACGC
GGATCTGGTCGTCGTCGACGAGGCGTCCATGCTTGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCCGTGGCACCCGGTG
CCCACCTCCTCCTTGTGGGCGATGTCGACCAGTTGCCCTCGGTCGGGGCGGGGGAGGTGCTCAGCGACCTGCTCGCGGAG
GGCAGTCCGGTCCCCGCCGTCCGGCTCACCCGGATCTTCCGGCAGGCCCAACAGTCGGGGGTGGTCACCAACGCCCACCG
GATCAACGCGGGGAAGCCCCCGCTCACCGAGGGGCTCAGCGACTTCTTCCTCTTCGTCGAGGACGAGACGGCGGACGCGG
GCAAGCTCGCCGTCGATGTGGCGGCCCGTCGCATCCCGGCCAAATTCGGTCTCGACCCGCGCCGTGACGTGCAGGTCCTC
GCGCCGATGCACCGCGGGCCGGCGGGCGCCGGTGAGCTGAACGGGCTGCTCCAGCAGGTCATCACGCCGGGCCGGCCCGA
CCTTCCCGAGAAGCGGTTCGGCGGCCGTGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTCTTCAACGGCACGGTCGGCGTCGTCACCGCCCTCGACCTCGACGAACAGAAGCTCACCGTCCGCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCGCACGCGTACGCCATGACGATCCACCGTTC
CCAGGGCAGCGAGTATCCGGCCGTCGTCATCCCCGTCACCAACAGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CGGCCGTCACCCGCGCCAAGAAGCTCGTCGTCCTCGTCGGGTCCCGTAAGGCGATCGGCCAGGCCGTCCGCACGGTTTCC
GCAGGCCGACGGTGTACGGCGCTGGATTTCCGGCTCCGAGGCGGCTCCGGAGAAGACTTCTCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(336-514)

Helix-hairpin-helix domain (HHH_5)

(94-143)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.993

100

0.36