Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VR625_RS09795 Genome accession   NZ_CP142147
Coordinates   2122401..2124134 (+) Length   577 a.a.
NCBI ID   WP_345982060.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117401..2129134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS09755 - 2117877..2118128 (+) 252 WP_109165832.1 acyl carrier protein -
  VR625_RS09760 - 2118169..2118891 (+) 723 WP_225976803.1 SDR family oxidoreductase -
  VR625_RS09765 - 2118932..2119708 (+) 777 WP_345982059.1 cyclase family protein -
  VR625_RS09785 - 2120479..2120787 (+) 309 WP_109165829.1 hypothetical protein -
  VR625_RS09790 - 2120840..2122285 (+) 1446 WP_109165828.1 FGGY family carbohydrate kinase -
  VR625_RS09795 rcrP 2122401..2124134 (+) 1734 WP_345982060.1 ABC transporter ATP-binding protein Regulator
  VR625_RS09800 - 2124134..2126062 (+) 1929 WP_161030458.1 ABC transporter ATP-binding protein -
  VR625_RS09805 - 2126090..2127262 (-) 1173 WP_345984141.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62386.56 Da        Isoelectric Point: 5.7190

>NTDB_id=839936 VR625_RS09795 WP_345982060.1 2122401..2124134(+) (rcrP) [Streptomyces sp. DSS69]
MLIKLLRAHLGPYKKPIALLVLLQLLQTCATLYLPSLNADIIDNGVVKGDTGYILEFGGLMIAVSVLQVLCNVGAVFFGA
RTASALGRDVRGAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSIIVAKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDPYEEKRFRGANTELTDVSLATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGVVLVDGEDVR
TLDPVLLAKTVSLVPQRPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=839936 VR625_RS09795 WP_345982060.1 2122401..2124134(+) (rcrP) [Streptomyces sp. DSS69]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGCGCTGCTGGTCCTTCTCCAGCTGCTCCA
GACCTGCGCCACTCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGATACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTGCTCCAGGTGCTCTGCAATGTCGGTGCCGTCTTCTTCGGGGCC
CGGACCGCCTCGGCGCTCGGGCGGGATGTGCGGGGCGCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCCCGGGAGCTCGG
GCGGTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTCCCGCTCTCGGCGGTC
CTGCTGGCCGTGGTGCCGGTGCTCGGGATCTCGGTGAGCATCATCGTGGCGAAGATGCGGCCGCTGTTCCGGACGATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTCCGCGACC
CTTACGAGGAGAAGCGGTTCCGGGGGGCCAACACCGAGCTGACCGATGTGTCGCTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACCTGTCGTCCGTCGCCGTGGTGTGGTTCGGCGCTCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGATTCGAGCGTCGTGCCG
CCCACCGCGCCCGTCACCGAACTGCGCCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGCTACCCGGGGGCCGA
GGAGCCGGTCCTGCGGGCCGTGGATCTGGTGGCCCGGCCCGGTGAGACCACCGCGATCATCGGGTCGACGGGGAGCGGGA
AGTCCACGCTGCTCGGTCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGTGGTGCTGGTCGACGGCGAGGACGTGCGG
ACACTGGACCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCCCAGAGGCCGTACCTCTTCTCGGGGACGGTCGCGAC
GAACCTGCGCTACGGGAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCACAGGCCAAGGGGTTCG
TGGAAGGGCTTGAGCACGGACTCGACGCGCCCATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
TCCATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
TGCCGCGCTGCGGGCCGCGCTGGCCCGCGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGCGTCTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGGCGGGTCGTGGGCAGCGGGACCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411