Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VR625_RS04865 Genome accession   NZ_CP142147
Coordinates   1071347..1072711 (-) Length   454 a.a.
NCBI ID   WP_109166617.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066347..1077711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS04840 - 1066523..1066870 (-) 348 WP_109166621.1 DUF6167 family protein -
  VR625_RS04845 - 1066878..1067336 (-) 459 WP_093692836.1 DUF948 domain-containing protein -
  VR625_RS04850 - 1067592..1069802 (+) 2211 WP_345981659.1 AAA family ATPase -
  VR625_RS04855 rpsD 1069820..1070434 (-) 615 WP_015607373.1 30S ribosomal protein S4 -
  VR625_RS04860 - 1070623..1071324 (+) 702 WP_109166618.1 DUF2470 domain-containing protein -
  VR625_RS04865 rarA 1071347..1072711 (-) 1365 WP_109166617.1 replication-associated recombination protein A Machinery gene
  VR625_RS04870 - 1072764..1073402 (-) 639 WP_109166616.1 vitamin K epoxide reductase family protein -
  VR625_RS04875 - 1073539..1074044 (+) 506 Protein_971 ATP-binding cassette domain-containing protein -
  VR625_RS04880 - 1074200..1074448 (+) 249 Protein_972 LuxR C-terminal-related transcriptional regulator -
  VR625_RS04885 hisS 1074541..1075803 (-) 1263 WP_161031565.1 histidine--tRNA ligase -
  VR625_RS04890 - 1075824..1076513 (-) 690 WP_161031566.1 MBL fold metallo-hydrolase -
  VR625_RS04895 - 1076661..1077455 (+) 795 WP_109166613.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48240.63 Da        Isoelectric Point: 6.1031

>NTDB_id=839928 VR625_RS04865 WP_109166617.1 1071347..1072711(-) (rarA) [Streptomyces sp. DSS69]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRVLDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRDLLRRALTDERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAALATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVSDRLYYTPTRHGAEARYADVVERVRERLGRGGGADPS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=839928 VR625_RS04865 WP_109166617.1 1071347..1072711(-) (rarA) [Streptomyces sp. DSS69]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCCCGTGTCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGGCTCGTCGAGG
GGAGCGGCGGTCCGGCCGGTGCCTCGTCGGTGATCCTCTGGGGCCCGCCCGGCACTGGGAAGACGACTCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACGCTGATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCGCCGCTGCTCTCGCGCTCCCTGCTCCTCACCCTGGAGCCGCTCACCGACGACGACCTGCGCGATCTGCTGCG
CCGGGCGCTCACCGACGAGCGCGGGCTCGGCGGAGCCGTCACCCTGCCCGAGGACGCGGAGGCACACCTCCTGCGCATCG
CGGGCGGCGACGCGCGCCGGGCGCTGACCGCCCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACACACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGCGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCACTGCACTACCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCCACCGCGCTGCCC
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACGATCGC
CCTGGCGCTCGCGCCCAAGTCCAACGCGGCGACGCTCGCGATCTTCGCCGCGCAGGAGGACGTCCGGAAGGGTCTCGCGG
GCCCCGTCCCGGCCCATCTGCGCGACGGCCATTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGATGTGCAGGGCGGTATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCAGCGACCGGCTGTACTACACCCCCACCCG
GCACGGCGCCGAGGCGCGGTACGCGGACGTGGTGGAGCGGGTCCGCGAGCGCCTGGGCCGTGGCGGCGGTGCGGACCCGT
CCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.47

95.595

0.425