Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VP461_RS16185 Genome accession   NZ_CP142100
Coordinates   3438544..3439809 (+) Length   421 a.a.
NCBI ID   WP_004704731.1    Uniprot ID   N8R1T1
Organism   Acinetobacter baumannii strain A20AB13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3433544..3444809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP461_RS16155 (VP461_16155) mutY 3433717..3434751 (-) 1035 WP_077165343.1 A/G-specific adenine glycosylase -
  VP461_RS16160 (VP461_16160) - 3434893..3435255 (-) 363 WP_039253978.1 HIT family protein -
  VP461_RS16165 (VP461_16165) - 3435438..3436175 (-) 738 WP_004704724.1 dienelactone hydrolase family protein -
  VP461_RS16170 (VP461_16170) - 3436347..3436505 (-) 159 WP_002053759.1 DUF1328 domain-containing protein -
  VP461_RS16175 (VP461_16175) - 3436699..3437157 (+) 459 WP_077165342.1 YcgN family cysteine cluster protein -
  VP461_RS16180 (VP461_16180) - 3437269..3438438 (+) 1170 WP_083028641.1 PQQ-dependent sugar dehydrogenase -
  VP461_RS16185 (VP461_16185) rarA 3438544..3439809 (+) 1266 WP_004704731.1 replication-associated recombination protein A Machinery gene
  VP461_RS16190 (VP461_16190) - 3439825..3440664 (-) 840 WP_077165341.1 formate/nitrite transporter family protein -
  VP461_RS16195 (VP461_16195) - 3440992..3441195 (-) 204 WP_025469217.1 hypothetical protein -
  VP461_RS16200 (VP461_16200) purC 3441388..3442107 (-) 720 WP_083028601.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  VP461_RS16205 (VP461_16205) - 3442144..3442746 (-) 603 WP_001177091.1 hypothetical protein -
  VP461_RS16210 (VP461_16210) dapA 3442762..3443655 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  VP461_RS16215 (VP461_16215) pncA 3443985..3444629 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46889.58 Da        Isoelectric Point: 5.8354

>NTDB_id=839724 VP461_RS16185 WP_004704731.1 3438544..3439809(+) (rarA) [Acinetobacter baumannii strain A20AB13]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQADKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEIENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEGRIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=839724 VP461_RS16185 WP_004704731.1 3438544..3439809(+) (rarA) [Acinetobacter baumannii strain A20AB13]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGATTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACACGCACCACTGCGTCAAATGATTGATCAGGGGCATTTACCTTCTATTATTTTTTGGGGACCGCCAGGTGTTG
GTAAAACAACAATTGCTTTACTTTTGGCGCAAGCAATAGACCGCCCATTTGTGAGTTTGTCTGCTCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTAACACCTGTGGTTTTTATTGATGAAATTCATCGCTTTAA
TAAATCACAGCAAGATGCATTACTGGGGGCTGTAGAAAAAGGAAAAATTACCTTAATAGGCGCGACCACAGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGTTGTCAGGTCTATACTTTAAACAGTTTAGACAGCGAAGCAATTCAGACG
CTACTCAACAATGCTCTCCAAGCAGATAAATTCTTAAAAGAACGTTACATTCATATTGAAGAGTACGATGCCCTTTTGCA
GTTTGCAGCAGGCGATGCCCGTAAAGCGCTTAATTTACTAGACTTAATTGCGAGTACTTTTGAGCCAGAAATTGAAAATA
CCATTACCAATGCTGTGGTGGTAAAAGTTGCCCAGCAAAACATTGCACGTTATGACAAATCGGGTGAGCAGCATTACGAC
CTCGTTTCTGCATTTATTAAATCGATTCGTGGTAGTGATCCAGATGCAGCTCTGTACTGGATGGCTCGTATGCTTAAAGG
CGGGGAAGATCCAGTTTTTATTGCAAGACGTATGTTGATTGCAGCCTCAGAAGACATTGGAAACTCGAATCCAAATGCGC
TTTTGCTTGCAGGTGAATGTTTCCGCTCTGTTCAAGCAGTGGGTATGCCTGAAGGTCGAATTATTTTGGGCCAAACCGCG
GTTTATTTAGCAACAAGTGCAAAAAGTAATAGTACTTATTTAGCAATTAACAAAGCATTGGAACTTGCCGAGAAAACGGC
AAATTTACCAGTGCCTTTACACTTGAGAAACGCACCAACCAAGCTGATGAAACAGCAAGGCTATGGCATCAATTATCTCT
ATCCTCATGATTACCCAGAGCACTTTGTGTTGCAAGACTATTTGCCACCTGAGTTGAAGGGAACCAAACTCTACGAGTCC
GCGAGAAATAAGCGTGAGGTTGAAGGTGAACGCTTACAGCAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

AAA C-terminal domain (AAA_assoc_2)

(181-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8R1T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.5

95.012

0.385