Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QPX65_RS00610 Genome accession   NZ_CP126698
Coordinates   130412..131122 (-) Length   236 a.a.
NCBI ID   WP_206624566.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125412..136122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS00580 (QPX65_00580) gspL 125597..126796 (+) 1200 WP_043920924.1 type II secretion system protein GspL -
  QPX65_RS00585 (QPX65_00585) - 126804..127295 (+) 492 WP_285455204.1 type II secretion system protein M -
  QPX65_RS00590 (QPX65_00590) - 127297..128058 (+) 762 WP_011078934.1 type II secretion system protein N -
  QPX65_RS00595 (QPX65_00595) cysQ 128185..129012 (-) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QPX65_RS00600 (QPX65_00600) nudE 129027..129581 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  QPX65_RS00605 (QPX65_00605) nfuA 129697..130281 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  QPX65_RS00610 (QPX65_00610) comF 130412..131122 (-) 711 WP_206624566.1 ComF family protein Machinery gene
  QPX65_RS00615 (QPX65_00615) bioH 131211..131978 (+) 768 WP_285455213.1 pimeloyl-ACP methyl ester esterase BioH -
  QPX65_RS00620 (QPX65_00620) - 132116..132586 (+) 471 WP_011078928.1 hypothetical protein -
  QPX65_RS00625 (QPX65_00625) - 132669..134993 (-) 2325 WP_285455217.1 Tex family protein -
  QPX65_RS00630 (QPX65_00630) greB 135229..135711 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27230.95 Da        Isoelectric Point: 9.6643

>NTDB_id=839631 QPX65_RS00610 WP_206624566.1 130412..131122(-) (comF) [Vibrio vulnificus strain VV2018]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=839631 QPX65_RS00610 WP_206624566.1 130412..131122(-) (comF) [Vibrio vulnificus strain VV2018]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTACCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGCCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGTGCCAGCTTGGCCCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGTTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCACAACTGGCCCGGAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475