Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPX68_RS08140 Genome accession   NZ_CP126696
Coordinates   1615021..1615800 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610021..1620800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS08120 trmFO 1610708..1612015 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPX68_RS08125 xerC 1612085..1613002 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QPX68_RS08130 hslV 1613018..1613563 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QPX68_RS08135 hslU 1613571..1614983 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  QPX68_RS08140 codY 1615021..1615800 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPX68_RS08145 flgB 1616154..1616543 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QPX68_RS08150 flgC 1616543..1616995 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  QPX68_RS08155 fliE 1617006..1617326 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QPX68_RS08160 fliF 1617369..1618979 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  QPX68_RS08165 fliG 1618992..1620008 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QPX68_RS08170 fliH 1620001..1620756 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=839564 QPX68_RS08140 WP_003154263.1 1615021..1615800(+) (codY) [Bacillus amyloliquefaciens strain GZY63]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=839564 QPX68_RS08140 WP_003154263.1 1615021..1615800(+) (codY) [Bacillus amyloliquefaciens strain GZY63]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471