Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QN089_RS09590 Genome accession   NZ_CP126689
Coordinates   1925666..1928125 (-) Length   819 a.a.
NCBI ID   WP_285215199.1    Uniprot ID   -
Organism   Kurthia sp. YJT4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920666..1933125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN089_RS09570 (QN089_09570) ruvX 1920811..1921230 (-) 420 WP_068452475.1 Holliday junction resolvase RuvX -
  QN089_RS09575 (QN089_09575) - 1921230..1921499 (-) 270 WP_068452472.1 IreB family regulatory phosphoprotein -
  QN089_RS09580 (QN089_09580) alaS 1921764..1924421 (-) 2658 WP_068452469.1 alanine--tRNA ligase -
  QN089_RS09585 (QN089_09585) - 1924772..1925557 (-) 786 WP_285215198.1 GNAT family N-acetyltransferase -
  QN089_RS09590 (QN089_09590) recD2 1925666..1928125 (-) 2460 WP_285215199.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QN089_RS09595 (QN089_09595) - 1928143..1928808 (-) 666 WP_285215200.1 tetratricopeptide repeat protein -
  QN089_RS09600 (QN089_09600) mnmA 1928825..1929946 (-) 1122 WP_285215201.1 tRNA 2-thiouridine(34) synthase MnmA -
  QN089_RS09605 (QN089_09605) - 1929965..1931110 (-) 1146 WP_285215202.1 cysteine desulfurase family protein -
  QN089_RS09610 (QN089_09610) - 1931125..1931544 (-) 420 WP_068452451.1 Rrf2 family transcriptional regulator -
  QN089_RS09615 (QN089_09615) - 1931676..1932962 (+) 1287 WP_285215203.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 91248.27 Da        Isoelectric Point: 4.6503

>NTDB_id=839419 QN089_RS09590 WP_285215199.1 1925666..1928125(-) (recD2) [Kurthia sp. YJT4]
MTENLSLFANEPFFVVGRPVVSIFHNAENLFSIVKVKIQETNTDYQEKEVIVAGYFPKVVEDALYRFTGRMTTHPKYGTQ
FKAETFEKEIPATEAGVISYLSSDLFPGIGQRTAKIIVDQLGADAIKVIIQDPSSLDGIPRLNEEKKETLRLVLQQNLGM
DRIMIKLGEWGFGAQLAIKIYQLYLDDTLQLLQENPYRLIQDVEGVGFQRADDLGAILGIEGKHPDRIEAAVLHIINQAS
ISEGHTYVSAEQVIPQAKALLEQSQPIQLTYEEISQAIIRLGENGQLCGEETRLYLPSLYYSEVGIASKILQLKEKNEQQ
SAFPLSEIRTWIGDAEERFGVTYATTQIHAIETAINSAVMILTGGPGTGKTTVVRGIVDVFAELHGLSLDPKEYSKKDEE
FPIILVAPTGRAAKRLSESTGLPAQTIHRLLGFNGQDKDEETEREIGGKLIIVDEMSMVDTWLAHQLLRALNDHCQIVFV
GDQDQLPPVGPGQVLKDLLASKAIPTVELTDVYRQADGSSIIELAHQMKMGEQPTNLTEKTKDRSFIPAYTNQVASVVQQ
VIGSALKKGFSIHDVQVLAPMYRGDAGIDALNKMIQEFVNPKKNAKTKEIVFGDTTYRIGDKVLQLVNQPNSNVFNGDMG
EIISILKAKETTEKQDVVIVSFDGIEVTYERSDLNQITLAYCCSIHKSQGSEFPMVIMPVVRSYAKMLRKNLLYTGLTRA
KNFLILCGEPDTFLRGIQNDADVLRQTTLAMRLGETSEQIAEKEATEQKVEETNDEMIQRNTFVLTMDNFMDISPMIGMD
GCKPSDFLIEVQQELLENE

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=839419 QN089_RS09590 WP_285215199.1 1925666..1928125(-) (recD2) [Kurthia sp. YJT4]
TTGACTGAAAATCTTTCACTATTTGCGAATGAACCATTTTTCGTAGTAGGTCGACCTGTCGTCTCTATTTTTCATAATGC
AGAAAATTTATTTTCAATTGTGAAAGTGAAAATTCAAGAGACGAATACAGATTACCAAGAAAAAGAAGTGATTGTCGCTG
GATATTTTCCAAAGGTAGTAGAGGATGCGCTCTATCGTTTTACAGGGCGTATGACAACCCATCCGAAATACGGCACACAA
TTCAAAGCAGAAACATTTGAAAAAGAGATTCCTGCAACTGAAGCAGGTGTCATCTCGTATTTATCAAGTGATTTATTCCC
AGGAATCGGACAACGAACAGCAAAAATCATTGTCGATCAATTGGGAGCGGATGCAATTAAGGTCATCATTCAAGATCCTT
CATCTTTGGATGGTATTCCGCGTTTAAATGAAGAAAAGAAAGAGACATTGCGACTTGTACTCCAACAAAATCTAGGGATG
GACCGTATTATGATTAAATTAGGCGAATGGGGTTTTGGCGCACAATTAGCAATCAAAATCTATCAGCTCTATTTAGATGA
TACACTTCAACTCTTACAAGAAAATCCGTACCGACTCATTCAAGATGTAGAAGGAGTGGGTTTTCAGCGTGCAGATGATT
TAGGCGCTATTTTAGGAATTGAAGGAAAGCATCCAGACCGTATTGAAGCAGCAGTGTTACATATTATTAATCAAGCATCG
ATTTCAGAAGGACATACCTATGTCTCTGCTGAACAGGTTATTCCACAAGCAAAAGCTCTTTTGGAACAAAGTCAGCCTAT
CCAACTCACTTACGAAGAGATTTCACAAGCGATTATTCGTCTTGGTGAAAATGGACAGTTGTGTGGTGAGGAGACACGTC
TCTATTTACCATCTCTTTATTATTCAGAGGTGGGGATTGCGTCAAAGATTTTGCAGTTAAAAGAGAAGAATGAACAACAA
TCAGCATTTCCGCTTTCTGAAATTCGCACATGGATTGGTGACGCAGAGGAACGCTTTGGTGTGACCTATGCAACGACACA
AATCCATGCAATTGAGACAGCTATTAATAGTGCGGTTATGATTTTAACAGGGGGACCAGGTACAGGGAAAACAACCGTTG
TACGTGGGATTGTTGATGTATTTGCAGAGTTACATGGATTATCACTTGATCCGAAAGAATATAGTAAAAAAGACGAAGAA
TTCCCCATTATTCTTGTTGCACCAACAGGTCGTGCCGCGAAGCGTTTAAGTGAATCGACAGGCTTACCTGCACAGACGAT
TCACCGTCTACTTGGCTTTAATGGACAAGATAAAGACGAAGAAACAGAACGAGAAATCGGTGGTAAATTAATTATTGTCG
ATGAGATGTCGATGGTTGATACGTGGCTCGCACATCAATTACTACGTGCATTAAATGACCACTGTCAAATTGTATTCGTT
GGTGACCAAGATCAGCTACCGCCTGTAGGTCCGGGGCAAGTGCTAAAAGATTTACTCGCTTCAAAAGCGATTCCAACGGT
CGAATTAACCGATGTGTATCGTCAAGCAGATGGCTCGTCTATTATTGAGTTGGCGCATCAGATGAAAATGGGAGAGCAAC
CGACGAATTTAACAGAGAAAACAAAAGACCGCTCCTTTATCCCTGCCTATACGAATCAAGTTGCGAGCGTCGTTCAACAA
GTGATTGGTTCCGCGCTTAAAAAAGGATTCTCAATTCACGATGTCCAAGTACTAGCGCCGATGTATAGAGGAGATGCCGG
AATTGATGCACTGAATAAAATGATTCAAGAGTTTGTCAATCCGAAAAAGAATGCGAAGACGAAAGAGATTGTCTTTGGTG
ACACAACGTACCGTATTGGCGACAAAGTGTTGCAACTTGTCAATCAGCCGAATAGTAATGTCTTTAATGGGGATATGGGC
GAAATTATTTCGATTTTAAAAGCGAAAGAGACGACGGAAAAACAAGACGTTGTCATCGTGTCATTTGATGGTATTGAAGT
AACGTATGAACGCTCCGATCTAAATCAAATTACACTTGCCTATTGTTGTTCGATTCATAAATCACAAGGTAGTGAGTTCC
CAATGGTCATCATGCCCGTTGTAAGAAGTTATGCCAAGATGTTACGAAAGAATCTTCTTTATACAGGTCTGACACGTGCG
AAAAACTTTTTGATTTTGTGCGGAGAACCCGATACATTTTTACGTGGTATTCAAAATGATGCAGATGTTTTAAGGCAGAC
AACACTTGCGATGCGCCTTGGTGAAACATCTGAACAAATTGCTGAAAAAGAAGCTACTGAACAAAAAGTAGAAGAAACGA
ATGATGAGATGATTCAACGCAATACATTTGTTCTAACGATGGACAATTTTATGGACATCTCGCCAATGATTGGTATGGAT
GGTTGTAAACCAAGTGATTTTTTAATTGAAGTACAACAAGAGTTACTAGAAAATGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.284

98.535

0.525