Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   VOI49_RS09090 Genome accession   NZ_CP142018
Coordinates   1799738..1802074 (-) Length   778 a.a.
NCBI ID   WP_324738997.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794738..1807074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS09070 mutY 1795132..1796298 (+) 1167 WP_115245695.1 A/G-specific adenine glycosylase -
  VOI49_RS09080 trxA 1797786..1798100 (-) 315 WP_003052691.1 thioredoxin -
  VOI49_RS09085 - 1798327..1799646 (+) 1320 WP_324738996.1 FAD-containing oxidoreductase -
  VOI49_RS09090 mutS/mutS2 1799738..1802074 (-) 2337 WP_324738997.1 endonuclease MutS2 Machinery gene
  VOI49_RS09095 - 1802231..1802776 (-) 546 WP_226314118.1 CvpA family protein -
  VOI49_RS09100 - 1802779..1803087 (-) 309 WP_003052702.1 hypothetical protein -
  VOI49_RS09105 rnhC 1803244..1804152 (+) 909 WP_115253128.1 ribonuclease HIII -
  VOI49_RS09110 lepB 1804164..1804757 (+) 594 WP_003052704.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87186.80 Da        Isoelectric Point: 6.9152

>NTDB_id=839223 VOI49_RS09090 WP_324738997.1 1799738..1802074(-) (mutS/mutS2) [Streptococcus dysgalactiae strain lu24]
MDKKILEQLEFDKVKEQFRAYLQTEQGNRELDQIEPLNHHDKIKHYFLEIEEMAGIFVEHHHFALGRLSDISASMRRLEL
EADLSIPELLAVKKILQVSAEASRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISD
KEHASRNVLQDLLKKQGDYLSESLIASRNGRSVLPVKNTFRNKVAGVVHDISASGNTVYIEPRALVQLNEELTQLQADER
HEVSRVLQTLSDLIRPHSRVLTNNAWILGHLDFIRAKYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSKD
LAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFSGIFADIGDEQSIEQSLSTFSSHMTHIVAILNQAD
ADSLVLFDELGAGTDPQEGASLAMAILEQLRLTNVKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPG
RSNAFEIARRLGLAEHIVKEAQTMTDTDSDVNRIIEQLERQTLESRKRLDHIREVEQDNLKFNRAVKKLYNEFSQAKDKE
IEKATLEAREIVDLALAESDSILNQLHDKAALKPHEVIEAKGQLKQLVPEKSLSQNKVLKKAKQLRAPRVGDDIIVTAYG
QRGTLVKELKDKKWEAQVGLIKMTLKEDEFSLVKVVEEAQKPKKKAINVVKKAATGGGPRARLDLRGKRYEEAMQELDAF
IDQALLNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=839223 VOI49_RS09090 WP_324738997.1 1799738..1802074(-) (mutS/mutS2) [Streptococcus dysgalactiae strain lu24]
ATGGATAAAAAGATTTTAGAACAGTTAGAATTTGATAAGGTCAAAGAACAATTTCGGGCTTACCTGCAGACAGAGCAGGG
TAACCGTGAATTAGACCAAATTGAACCCCTCAATCATCATGACAAAATCAAACATTACTTTTTAGAAATTGAAGAAATGG
CTGGCATTTTTGTAGAGCATCATCACTTTGCATTGGGCAGGCTGTCTGACATTTCAGCTAGCATGAGACGTTTGGAACTG
GAAGCTGATTTGAGCATTCCCGAATTATTAGCAGTCAAAAAAATACTTCAGGTATCAGCAGAAGCGAGTCGCTTTTATGT
TGATTTGGAAAACGTTCAGCTGCAAGCCTTGAAGCGTTTATTTGAAAATCTGGAGCTTTTCCCTAGCCTTCAAGGCAGTC
TTCAGGCTATTAATGACGGTGGTTTTGTGGAAAGTTTTGCCAGTCCCGAGTTAGAAAAAATTCGTCGTAGCATCTCAGAC
AAAGAACATGCGAGCCGGAATGTCTTACAAGATTTACTCAAAAAGCAAGGTGACTATTTGTCAGAAAGCTTGATTGCTAG
CCGAAACGGACGTAGTGTCTTACCTGTCAAAAATACCTTCCGTAATAAGGTGGCAGGGGTCGTTCACGATATTTCGGCTT
CAGGAAATACGGTTTATATTGAACCACGAGCTCTTGTTCAACTAAATGAAGAGCTGACGCAGTTACAAGCCGACGAACGC
CATGAAGTGTCACGTGTCCTTCAAACCCTATCAGACCTGATTAGACCTCATAGTCGAGTTCTTACCAATAATGCTTGGAT
TCTGGGGCACCTGGATTTTATCAGAGCCAAATACCTCTATATGAGAGACAATAAGGCCACGGTTCCGGCTATTTCGGATG
ATAAAAGTTTACAGTTGTTAAATGTGCGCCACCCTCTTTTGCAGGAGCCAGTTGCTAATGATTTGCATTTCTCTAAAGAT
TTGGCTGTTATTGTGATTACTGGTCCGAATACTGGTGGTAAAACCATCATGCTAAAAACGCTAGGTTTAGCCCAGCTAAT
GGCCCAATCGGGTCTGCCTATTCTAGCAGATAAAGGTTCCAAAGTTGCTGTTTTTAGTGGTATTTTTGCTGACATTGGCG
ATGAACAATCCATTGAGCAGAGCTTATCAACTTTCTCTAGCCATATGACTCATATTGTTGCTATTTTGAATCAAGCTGAT
GCAGACAGTTTAGTACTCTTTGATGAGCTGGGGGCAGGAACAGATCCGCAAGAAGGAGCAAGTCTTGCTATGGCAATCTT
GGAGCAGTTACGCTTGACTAATGTCAAAACCATGGCGACTACCCATTACCCTGAACTAAAAGCATATGGCATCGAAACTC
CCTATGTGGAAAATGCCAGTATGGAGTTCGATAGCATGAGTTTAAAACCAACTTACCGCTTTATGCAGGGTGTTCCAGGT
CGTTCAAATGCCTTTGAAATTGCTAGACGACTTGGGTTGGCAGAGCACATTGTCAAAGAAGCTCAAACCATGACGGACAC
CGATAGTGATGTTAACCGTATTATCGAACAGTTAGAGAGACAAACTTTGGAGAGTCGTAAGCGGCTTGACCATATTCGAG
AAGTGGAGCAAGATAACCTCAAATTTAACCGTGCGGTCAAAAAATTGTACAATGAGTTCTCACAGGCCAAAGATAAGGAA
ATTGAAAAAGCTACCCTTGAAGCGCGTGAGATTGTAGACTTAGCTTTAGCAGAAAGTGACAGTATTTTAAACCAGTTGCA
TGACAAAGCTGCACTTAAACCTCACGAAGTTATTGAAGCCAAGGGGCAACTCAAACAGTTAGTGCCAGAAAAGAGTCTCT
CTCAAAACAAGGTCCTAAAGAAAGCGAAGCAATTACGAGCTCCTCGAGTAGGAGACGATATTATTGTAACAGCCTATGGC
CAAAGAGGAACCTTGGTAAAAGAACTCAAAGATAAGAAGTGGGAAGCACAAGTTGGACTGATCAAAATGACCCTCAAAGA
AGATGAATTTAGTCTTGTGAAGGTTGTTGAGGAAGCTCAAAAACCAAAGAAAAAAGCTATCAACGTGGTCAAGAAGGCTG
CTACTGGTGGTGGTCCTCGTGCCCGTCTGGATTTGCGTGGCAAACGGTATGAAGAAGCGATGCAAGAACTAGACGCCTTT
ATTGACCAAGCTCTCTTAAATAACATGAGCCAAGTGGATATTATTCATGGGATTGGCACTGGTGTAATCCGTGAAGCTGT
TACCAAATACCTCAGACGAAACAAACATGTTAAAAGCTTTGGTTATGCTCCACAGAATGCGGGTGGATCAGGGTGTACCA
TTGCGAACTTAGGGTGA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(703-776)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

MutS domain V (MutS_V)

(324-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.38

100

0.41