Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VIX88_RS01335 Genome accession   NZ_CP142016
Coordinates   276760..278037 (-) Length   425 a.a.
NCBI ID   WP_064970435.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271760..283037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS01310 (VIX88_01310) - 272262..274010 (+) 1749 WP_154212617.1 TrkH family potassium uptake protein -
  VIX88_RS01315 (VIX88_01315) - 274017..274709 (+) 693 WP_064970438.1 potassium channel family protein -
  VIX88_RS01320 (VIX88_01320) - 274713..275333 (+) 621 WP_038693277.1 NUDIX hydrolase -
  VIX88_RS01325 (VIX88_01325) - 275362..276168 (+) 807 WP_064970437.1 lysophospholipid acyltransferase family protein -
  VIX88_RS01330 (VIX88_01330) - 276152..276763 (+) 612 WP_064970436.1 L-threonylcarbamoyladenylate synthase -
  VIX88_RS01335 (VIX88_01335) rarA 276760..278037 (-) 1278 WP_064970435.1 replication-associated recombination protein A Machinery gene
  VIX88_RS01340 (VIX88_01340) - 278155..279033 (+) 879 WP_127919813.1 IS982-like element ISRa1 family transposase -
  VIX88_RS01345 (VIX88_01345) yidD 279105..279359 (+) 255 WP_064969823.1 membrane protein insertion efficiency factor YidD -
  VIX88_RS01350 (VIX88_01350) lgt 279367..280218 (+) 852 WP_064970434.1 prolipoprotein diacylglyceryl transferase -
  VIX88_RS01355 (VIX88_01355) prfB 280379..281491 (+) 1113 WP_064970451.1 peptide chain release factor 2 -
  VIX88_RS01360 (VIX88_01360) - 281569..282246 (+) 678 WP_004917711.1 DedA family protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47506.20 Da        Isoelectric Point: 6.5101

>NTDB_id=839093 VIX88_RS01335 WP_064970435.1 276760..278037(-) (rarA) [Riemerella anatipestifer strain 59RAST107]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVPQEFLPEELSGVS
FYCSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=839093 VIX88_RS01335 WP_064970435.1 276760..278037(-) (rarA) [Riemerella anatipestifer strain 59RAST107]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGCTTTGAGGTGGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAACTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGTGAG
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGTGATGTTAATGCCGCTTTGTACTGGCTAGGGAG
AATGCTCGTGGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACAATGGCTAACAGTTGTTTTCAATCAGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCTTCACCTAAGAGTAATTCGGCGTATCAAGCCATTAATGAGGCAATGGCAATGGC
GAAAAAAACAGCTCATTTGCCCGTGCCATTGCACTTAAGAAATGCTCCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATTGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAATGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.148

95.529

0.384