Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPK28_RS09005 Genome accession   NZ_CP126576
Coordinates   1752166..1752945 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain CQMB003     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747166..1757945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS08985 trmFO 1747863..1749167 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPK28_RS08990 xerC 1749234..1750148 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  QPK28_RS08995 hslV 1750162..1750707 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  QPK28_RS09000 hslU 1750715..1752127 (+) 1413 WP_254926368.1 HslU--HslV peptidase ATPase subunit -
  QPK28_RS09005 codY 1752166..1752945 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPK28_RS09010 flgB 1753299..1753688 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  QPK28_RS09015 flgC 1753688..1754140 (+) 453 WP_284632568.1 flagellar basal body rod protein FlgC -
  QPK28_RS09020 fliE 1754154..1754471 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  QPK28_RS09025 fliF 1754522..1756123 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  QPK28_RS09030 fliG 1756137..1757153 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  QPK28_RS09035 fliH 1757137..1757904 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=838790 QPK28_RS09005 WP_003181756.1 1752166..1752945(+) (codY) [Bacillus licheniformis strain CQMB003]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=838790 QPK28_RS09005 WP_003181756.1 1752166..1752945(+) (codY) [Bacillus licheniformis strain CQMB003]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467