Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   VJ737_RS28820 Genome accession   NZ_CP141909
Coordinates   6336680..6338413 (-) Length   577 a.a.
NCBI ID   WP_184592322.1    Uniprot ID   A0A7W5F1S8
Organism   Streptomyces sp. CGMCC 4.1772     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6331680..6343413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ737_RS28810 (VJ737_28810) - 6333332..6334630 (+) 1299 WP_229845535.1 RNA polymerase sigma factor -
  VJ737_RS28815 (VJ737_28815) rcrQ 6334752..6336680 (-) 1929 WP_184592324.1 ABC transporter ATP-binding protein Regulator
  VJ737_RS28820 (VJ737_28820) rcrP 6336680..6338413 (-) 1734 WP_184592322.1 ABC transporter ATP-binding protein Regulator
  VJ737_RS28825 (VJ737_28825) - 6338558..6340012 (-) 1455 WP_184592320.1 FGGY family carbohydrate kinase -
  VJ737_RS28830 (VJ737_28830) - 6340160..6340465 (-) 306 WP_184592318.1 YtxH domain-containing protein -
  VJ737_RS28850 (VJ737_28850) - 6341513..6342997 (+) 1485 WP_324792410.1 SpoIIE family protein phosphatase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62652.66 Da        Isoelectric Point: 5.2419

>NTDB_id=838720 VJ737_RS28820 WP_184592322.1 6336680..6338413(-) (rcrP) [Streptomyces sp. CGMCC 4.1772]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNADIIDQGVVNGDTGYIVGYGGLMIGISLVQVVTNIGAVYYGA
RTAAALGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRAMQERLDTVNQVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDFALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PSAPVRELRRHGHLEIRGAGFRYPGAEEPVLRAVDLLARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVEVA
EIDPVLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQGKDFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=838720 VJ737_RS28820 WP_184592322.1 6336680..6338413(-) (rcrP) [Streptomyces sp. CGMCC 4.1772]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATAGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACCAGGGTGTCGTGAACGGTGACACCGGCTACA
TCGTGGGCTACGGCGGCCTGATGATCGGCATCTCGCTGGTCCAGGTCGTCACCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCCGCGGCACTCGGGCGGGACGTGCGGGCGTCCGTGTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGCTGGG
TCAGTTCGGGGCCCCGTCACTGATCACCCGTACGACGAACGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTTGACGTGCCGCTGTCCGGGGTG
CTGGTGGCGGTCGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGGCGATGCA
GGAGCGGCTGGACACGGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGATCTCACGGACTTCGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCTGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCCTCCAGCGTCGTGCCG
CCGTCCGCGCCCGTACGGGAGCTGCGCCGGCACGGGCATCTGGAGATCCGGGGTGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGGGCCGTGGACCTGCTCGCGCGGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGATGGGCAGGTGCTCGTGGACGGTGTGGAGGTGGCG
GAGATCGATCCGGTGCTGCTCGCGCGGACCGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGCACGGTGGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGGCAAGGACTTCG
TCGAGCGTCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGGACGAATGTCTCCGGCGGTCAGCGGCAGCGCCTC
GCCATCGCCCGGACCCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCCGCCCTGCGGGCCGCGCTCGCGCAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W5F1S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.233

89.948

0.371