Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLUL007_RS01020 Genome accession   NZ_CP126569
Coordinates   185324..186112 (+) Length   262 a.a.
NCBI ID   WP_396425933.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 180324..191112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS00995 (LLUL007_00980) - 180635..181420 (+) 786 WP_396425932.1 DNA/RNA non-specific endonuclease -
  LLUL007_RS01000 (LLUL007_00985) - 181589..181798 (+) 210 WP_014571884.1 hypothetical protein -
  LLUL007_RS01005 (LLUL007_00990) - 181810..182049 (+) 240 WP_011675217.1 hypothetical protein -
  LLUL007_RS01010 (LLUL007_00995) - 182247..183827 (+) 1581 WP_021036578.1 hypothetical protein -
  LLUL007_RS01015 (LLUL007_01000) - 183957..185171 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  LLUL007_RS01020 (LLUL007_01005) codY 185324..186112 (+) 789 WP_396425933.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLUL007_RS01025 (LLUL007_01010) gatC 186390..186695 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLUL007_RS01030 (LLUL007_01015) gatA 186695..188155 (+) 1461 WP_396425934.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLUL007_RS01035 (LLUL007_01020) gatB 188180..189613 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29188.51 Da        Isoelectric Point: 4.5254

>NTDB_id=838711 LLUL007_RS01020 WP_396425933.1 185324..186112(+) (codY) [Lactococcus cremoris strain UL007]
MSTLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANIPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=838711 LLUL007_RS01020 WP_396425933.1 185324..186112(+) (codY) [Lactococcus cremoris strain UL007]
GTGTCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACATTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTGGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

98.855

100

0.989
  codY Bacillus subtilis subsp. subtilis str. 168

47.451

97.328

0.462