Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QMK35_RS06190 Genome accession   NZ_CP126540
Coordinates   1304206..1306593 (+) Length   795 a.a.
NCBI ID   WP_285159946.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1299206..1311593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS06170 (QMK35_06170) sal 1299391..1301022 (+) 1632 WP_285159943.1 Sal family ABC-F type ribosomal protection protein -
  QMK35_RS06175 (QMK35_06175) - 1301083..1302225 (+) 1143 WP_285159944.1 cysteine desulfurase family protein -
  QMK35_RS06180 (QMK35_06180) mnmA 1302226..1303338 (+) 1113 WP_183076979.1 tRNA 2-thiouridine(34) synthase MnmA -
  QMK35_RS06185 (QMK35_06185) - 1303536..1304201 (+) 666 WP_040030022.1 tetratricopeptide repeat protein -
  QMK35_RS06190 (QMK35_06190) recD2 1304206..1306593 (+) 2388 WP_285159946.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QMK35_RS06195 (QMK35_06195) alaS 1306893..1309523 (+) 2631 WP_107384958.1 alanine--tRNA ligase -
  QMK35_RS06200 (QMK35_06200) - 1309591..1309851 (+) 261 WP_019469413.1 IreB family regulatory phosphoprotein -
  QMK35_RS06205 (QMK35_06205) ruvX 1309855..1310283 (+) 429 WP_019469412.1 Holliday junction resolvase RuvX -
  QMK35_RS06210 (QMK35_06210) - 1310300..1310626 (+) 327 WP_107384957.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89774.17 Da        Isoelectric Point: 4.5619

>NTDB_id=838677 QMK35_RS06190 WP_285159946.1 1304206..1306593(+) (recD2) [Staphylococcus cohnii strain SDAQ-1]
MDNPTLFNNSMIKGTVDAILFQNKDNFYTVLKVDTIESNEEFDSMPTVVGFFPEIAEGDVYTFKGQVVSHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAISDILNDSSILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQVYLGDTLNIVENKPYQLVYDVKGIGFNKADTLARNVGIQYNDDERLKAGLLYVLEEECIKQG
HTYLPTQTVLEMTQEMLSQPPNEVIEHQQLENMIQVLVEDTKLVKQESEIAIPSLYYSELKSVQNLYRNYTYTNKLKEIE
QSELQLEIGEIEQRNQVTYANSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQTILNPKEKETREVEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVVVGIFW
AKENALNKDVIVVDFDGNEITFVRQDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLNTHGQVRMTQLCTFLKTYFNNDDRKDEDEVNATFDSTTVLTEENIYKINPMINMGDISPYDFVEH

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=838677 QMK35_RS06190 WP_285159946.1 1304206..1306593(+) (recD2) [Staphylococcus cohnii strain SDAQ-1]
ATGGATAACCCTACATTATTTAATAATTCAATGATTAAAGGTACTGTAGATGCTATCTTGTTTCAAAACAAAGACAATTT
TTATACTGTTTTAAAAGTAGATACGATAGAATCTAATGAAGAATTTGATTCTATGCCTACAGTTGTAGGGTTTTTTCCAG
AAATTGCTGAAGGCGATGTTTATACTTTTAAAGGACAAGTCGTTTCACATCCTAAATATGGTAAACAGTTAAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCTCAAACAAAAGAAGCTATAATTAGCTATTTATCTAGTGATTTATTTAAAGGCATAGGTAA
AAAAACGGCCCAAAATATTGTAAACACACTTGGAGAAAATGCAATTTCAGATATTTTAAATGATTCATCTATTTTAGAAA
AGGTACCTAGTTTGCCAAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCGAGTAATCAAGAAACAGAGCAAATCATT
ATTCGATTACATGATTTAGGGTTTGGGCCTAAACTCGCGATGGCAATCTATCAAGTTTATTTAGGCGATACACTCAATAT
TGTAGAAAACAAACCCTATCAATTGGTTTACGACGTGAAGGGTATCGGATTTAACAAAGCAGATACTTTAGCACGAAATG
TAGGTATTCAATATAACGATGATGAGCGTTTAAAAGCTGGTTTATTATATGTATTAGAAGAAGAATGCATTAAGCAAGGA
CACACATACTTGCCGACACAAACTGTATTAGAAATGACACAAGAAATGTTGTCTCAACCACCTAATGAAGTGATTGAGCA
TCAACAGTTAGAAAATATGATTCAAGTCCTTGTTGAAGATACAAAATTAGTAAAACAAGAAAGTGAAATAGCAATTCCTA
GTTTATATTATTCAGAACTTAAAAGTGTTCAAAACTTATATCGTAATTACACATATACGAATAAATTAAAAGAAATAGAA
CAATCTGAATTACAATTAGAAATTGGTGAAATAGAACAACGTAATCAGGTTACATATGCTAATTCTCAAAGAGATGCGTT
ACAAACTGCAATCAATACTAAAATTATGCTGTTAACTGGCGGTCCAGGAACAGGAAAGACGACTGTGATTAAAGGTATTG
TTGAATTATATGCAGAAATACATGGTTTATCTTTAGATTATGATGATTATCAAAACGATGACTATCCCGTTGTACTAGCA
GCCCCGACAGGAAGAGCTTCAAAACGGTTGGCTGAATCTACGGGATTGGAAGCTATGACTATACATCGGTTAATAGGTTG
GAATCAAGACACACAACCAGAGGATATTTTAGATAATGAGATTTCAGCGAAATTAATTATTATAGATGAAATGTCAATGG
TCGACACTTGGTTATTTCATCAATTCCTTAGTGCCGTCCCTATAGATGCTCAAGTCATATTAGTAGGTGATGAAGACCAA
TTACCTTCTGTAGGCCCAGGTCAGGTTTTTAAAGATCTCATTGATTCTAAAGTAATTCCCAGAGTGAATCTAACTGAAGT
TTACCGACAACAAGATGGATCTAGTATCATAGAATTAGCACATAGAATGAAATTGGGTGAACCTATTGATATTACACAAA
GATTTCACGATCGTAACTTTATCAACTGTTCAACAGATCAAATACCTTCAGTAGTTGAAAAGGTGGTTTCAAGCGCTGTA
AATAAAGGTTATGATATGAGTGATATACAAGTATTAGCTCCGATGTATAAAGGTTCAGCTGGTATAAAAAAATTAAATAC
TGTATTGCAAACAATTTTAAACCCTAAAGAGAAAGAAACACGTGAAGTTGAATTCGGGGATGTTGTCTTTAGAAAAGGAG
ATAAAGTACTACAACTAGTAAATAGACCAAGTGATAATATATTTAATGGTGATATTGGAGTGGTTGTTGGTATATTTTGG
GCAAAAGAAAATGCCTTAAATAAAGATGTGATTGTCGTTGATTTTGACGGAAATGAAATTACTTTTGTAAGGCAAGATTT
ATTGGAATTAACACATGCATATTGTACGTCTATTCACAAATCACAAGGTTCCGAATTTCCAATCGTTATTATGCCTATGG
TTAAGCAATATTTTAGAATGTTGCAAAAACCAATATTATATACTGGACTAACAAGAGCTAAGCAATCACTGGTATTTTTG
GGGGACCCACAAGCTTTCGAAATCGGTTTAAATACACATGGCCAAGTGAGAATGACACAGCTTTGTACGTTCTTAAAAAC
GTATTTTAATAATGATGATCGTAAAGATGAAGATGAAGTTAATGCTACATTTGATTCGACGACTGTTTTAACAGAAGAAA
ATATATATAAAATTAATCCTATGATTAATATGGGAGATATTTCGCCATATGATTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.505

99.623

0.503